durrantmm Goto Github PK

2017-05-18-snakemake

anshultutorial

ase_read_counting_workflow

Snakemake workflow for removing mapping bias from sequencing data, and then counting the number of reads per allele at loci of interest.

asetools

bhattlab

This is the code that I developed in the bhatt lab

dada2_snakemake

dnaseq_variant_calling_workflow

dplython

dplyr for python

durrantmm.github.io

Matt Durrant's Personal Website

durratools

eagle

Detect environment effects on ASE

eagle2

gatk-rnaseq-variant-calling-workflow

genomic_ase_read_counting_workflow

ishunter

ispeaks

Peak caller for insertion sequences within metagenomic samples.

metaseqml

Classification of sequencing reads

mustache

A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.

mustache2

mustache_old

pipelines

Data processing and analysis pipelines

ppi_randomforest_prediction

This repository houses the majority of the resources used for Matt Durrant's 2016 Fall semester project. The focus of this project was to create a random forest machine learning model to predict protein-protein interactions.

project2_assembler

Our second project github repository

pytidyverse

A simple python wrapper to easily import packages that were designed to syntactically mimic the R tidyverse

readpy

A simple python package designed to syntactically mimic the readr R package.

rnaseq_variant_calling_workflow

This is an human RNAseq variant calling workflow, following the GATK pipeline. Also includes ADAR-site elimination.

shiny-omics

tidypython

tidypython - A simple python package designed to syntactically mimic the tidyr package in R.

variantmanager

A software suite and web plugin to manage variants for various human genomic projects.