kdbrumfield Goto Github PK
Name: Kyle Brumfield
Type: User
Bio: Ph.D. student in the Colwell and Huq Lab at The University of Maryland, College Park.
Name: Kyle Brumfield
Type: User
Bio: Ph.D. student in the Colwell and Huq Lab at The University of Maryland, College Park.
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Supporting material and code for primate ACE2 project
Visualize whole genome alignments as linear maps
Pipeline for bacterial genome assembly, quality control and annotation
Bayesian inference of ancestral dates on bacterial phylogenetic trees
Changes bases in a fasta file at user specified positions
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
Micro 612 genomics workshop
Python tool for the analysis and visualization of mobile genetic elements
Evidence of Environmental Evolution of Toxigenic Vibrio cholerae in Aquatic Reservoirs
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Gotree
ISQuest
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Script(s) used in publication of King et al, 2019 "A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event"
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
Mobile Genetic Elements Retrieving Tool
Best-fit model selection
A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.
Population genetic scripts
Short scripts used for Assembly and Annotation
A python implementation of the Statistical Coupling Analysis (SCA)
Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag
A fast reference-guided genome assembly scaffolder
Rapid large-scale prokaryote pan genome analysis
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.