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License: MIT License
At the moment, hdf5 images are read with 16-bit imageloaders in bigdataviewer - see: bigdataviewer/bigdataviewer-core#128
This gives weird results, as I then try and convert from 16-bit to 8-bit to write for elastix and end up writing images to a strange range. Would be easiest to fix upstream.
Use n5 for now.
Relative paths are currently used for the saved xml from registration plugin. This means that if files are moved around (and not as a whole folder structure), the paths break.
It would be good to provide some checkbox to save as relative vs absolute
This should be a tickbox option in the elastix menu, rather than on by default.
Brightness and contrast of images are off when loaded in the newest bigwarp version.
(can be adjusted via top menu of bdv window manually - but not via the side panel)
When a mask is written, it just checks if a certain name already exists - which for a fixed mask is always 'FIXED_MASK_0' or something like this. Therefore, if you use a new mask for the next registration, it will just re-use the old one as that filename already exists. Need to give some unique name somehow / some way to specify which file it came from.
(at the moment, just wipe the folder in between successive masks)
Elastix versions greater than 5.0.0 cause errors on windows
-save in metadata
The file dialog for this is currently an 'open', rather than a 'save'. On mac, this seems to mean you can't give an extra filename.
Swap to a save dialog
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