jmtyszka / citatlaskit Goto Github PK

Hi Dr. Tyszka,
First, I want to say I am very excited about this atlas.

I am currently trying to warp an individual structural scan to the CIT168_T1w_700um_MNI.nii.gz template using tmp2ind_T1.sh. The third argument calls for a prob atlas. Is this the CIT168_iAmyNuc_700um_MNI.nii.gz file included in the atlas download? What is the difference between the "i" and "p" labeled "AmyNuc" nifti files?

Ultimately, I am attempting to warp all of my individual structural scans to your T1w 700um atlas and export the individual amygdala subfields as text files to be brought up in a separate software. How might I access individual subfield NIFTI files from the atlas download in order to convert to text files? I plan on using fsl's fsl2ascii in order to convert the nifti's but any insight on this process would be extremely helpful!

Thank you so much in advance and I hope to hear from you soon.

Sincerely,
Steven Granger