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ants

Advanced Normalization Tools (ANTs)

astrokit

Astronomy utilities

atlaskit

Tools for working with brain atlas labels

betelgeuse_variability

Visible Light Curve Analysis

bidskit

Utility functions for working with DICOM and BIDS neuroimaging data

bloch-simulator-python

Fork of Niraj Amalkant's python port of BrIan Hargreaves original C-language Bloch simulator

bspm

Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12

bssfp

caret_demo

Demo of basic R Caret features

cbic-psychopy

PyschoPy template scripts for fMRI

cbicqc

CBIC Quality Assurance Package

cbicqclive

MRI QA script for in vivo EPI data

cit168-subcorticalatlas

Crowd-sourced in vivo probabilistic atlas of subcortical brain nuclei

citatlaskit

Tools for applying the CIT168 atlas to individual MRI data

contecoreexamplescripts

Example PTB3 scripts for dual monitor display with Matlab2017b and Windows 7

contendar

Caltech Conte NDAR scripts

dcmtk

Official DCMTK Github Mirror

despot

DESPOT relaxation mapping

dicomkit

DICOM utilities

docker-fix

Debugging fork of dockerized FSL ICA-FIX solution

et

Matlab video eye tracking

fmri_utilities

Collection of useful bash and python scripts for fMRI

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

freesurfer-editing-utils

Utilities for visualization and analysis or Freesurfer edits

frogspawn

Image Analysis Tools for Spherical Embyros

funcloc

Functional localizer scripts for PTB3

heatmapeyetracking

A quick test with ARKit 2 implementing a heatmap for eye tracking

horos

Horos™ is a free, open source medical image viewer. The goal of the Horos Project is to develop a fully functional, 64-bit medical image viewer for OS X. Horos is based upon OsiriX and other open source medical imaging libraries. Horos is made freely available under the GNU Lesser General Public License, Version 3 (LGPL-3.0). Horos is linked against the Grok JPEG 2000 library, for fast viewing of JPEG 2000 images. This library is licensed under the terms of the GNU Affero General Public License.

kstars

Desktop Planetarium

mrgaze

Eye Tracking and Gaze Estimation in Python