jananiravi / sigmafactor-network-mtb Goto Github PK
View Code? Open in Web Editor NEW2016 Sigma factor network in M. tuberculosis | https://jananiravi.github.io/publication/2016/natcomm/
License: MIT License
sigmafactor-network-mtb's Issues
Fig. 6 | Add network properties codes + data
- Add the codes to generate all three panels
- Add the corresponding processed data (to plot elsewhere)
- Add the raw data for the networks being compared (sigma-factor and transcription factor networks)
Fig. S3 | Add hierarchy codes + data
-
Add the scripts to
- calculate the hierarchy levels,
- the appropriate network hierarchy, and
- the clustering coefficients for the top/middle/bottom levels of the sigma factor network.
- plot the Supp. Fig. 3 panels
-
Also, add the (generated) data used to plot the figures
Fig. S5 | Add coexpression analysis codes + data
- Add raw data retrieved from TBDB
- Add codes to analyze & plot the data
- Add the processed data (to plot externally, as needed)
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