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Sigma factor network in M. tuberculosis

Reconstruction and topological characterization of the sigma factor regulatory network of Mycobacterium tuberculosis

Chauhan R, Ravi J, Datta P, Chen T, Schnappinger D, Bassler K, Balázsi G, Gennaro ML.

Nat Commun. 2016 Mar 31;7:11062. doi: 10.1038/ncomms11062.

PubMed | Manuscript PDF | Supp Material | Data

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Fig. S3 | Add hierarchy codes + data

  • Add the scripts to

    • calculate the hierarchy levels,
    • the appropriate network hierarchy, and
    • the clustering coefficients for the top/middle/bottom levels of the sigma factor network.
    • plot the Supp. Fig. 3 panels

  • Also, add the (generated) data used to plot the figures

Fig. 6 | Add network properties codes + data

  • Add the codes to generate all three panels
  • Add the corresponding processed data (to plot elsewhere)
  • Add the raw data for the networks being compared (sigma-factor and transcription factor networks)

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