Respiratory syncytial virus (RSV) is a single strand 15kb -RNA virus.
This repository contains nextstrain builds which are available through the nextstrain community functionality via the following URLs:
- RSV-A F gene sequences: nextstrain.org/community/JianiC/rsv/A/F
- RSV-A G gene sequences: nextstrain.org/community/JianiC/rsv/A/G
- RSV-A whole genome sequences: nextstrain.org/community/JianiC/rsv/A/WGS
- RSV-B F gene sequences: nextstrain.org/community/JianiC/rsv/B/F
- RSV-B G gene sequences: nextstrain.org/community/JianiC/rsv/B/G
- RSV-B whole genome sequences: nextstrain.org/community/JianiC/rsv/B/WGS
RSV Whole-genome sequences as well as different single-genome sequences (G gene, F gene) were retrieved from Genbank.
Different searching terms have been used to get RSV sequences. Search method 1:
("Human Respiratory syncytial virus"[Organism] OR Respiratory syncytial virus[All Fields]) AND "Human orthopneumovirus"[porgn] AND *GeneName*)
Search method 2:
("Human Respiratory syncytial virus X "[Organism] OR Respiratory syncytial virus[All Fields]) AND "Human orthopneumovirus"[porgn] AND *GeneName*)
where X = A
or X = B
Hadfield et al., Nextstrain: real-time tracking of pathogen evolution, Bioinformatics (2018)