jameshadfield Goto Github PK

artic-rampart-ebov

testing purposes only

basel-flu

bioconda-recipes

Conda recipes for the bioconda channel.

compare_nextstrain_tmrcas

covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

ebola-nord-kivu

mostly unpublished data relating to the 2018-20 Nord Kivu DRC ebola outbreak

hcov-19-genomics-nextstrain

Repo for local NextStrain build

jscandy

JScandy is dead. Long live phandango!

minorvariants

analysis of minor allele resistance (variants) using pileups across known positions

nextstrain-community-build

nextstrain-iframe

pan-genome-t-sne

t-SNE dimension reduction of bacterial pan genome data

paninisim

simulated genomes to test panini

phandango

an interactive viewer for populations of bacterial genomes linked by a phylogeny

phandangoexampledata

The data underlying the examples on phandango.net

phylocanvas

Phylogenetic tree visualisation for the web.

rampart

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

rsv

scratch

setup

following https://github.com/trvrb/setup

understandinggubbins

Helper scripts to parse gubbins and BratNextGen output in conjunction with iCANDY

veme2019

Nextstrain workshop for VEME 2019, Hong Kong