Comments (2)
@hrshdhgd we are still pinning sssom in the dependencies. Is the new sssom_schema ready tobe used?
from ontology-access-kit.
It should be ready. I don't recollect the new version breaking anything. We had anchored it so it didn't interfere with your presentation.
from ontology-access-kit.
Related Issues (20)
- Missing `defusedxml` dependency HOT 3
- Run subset of tests in environment with no extras installed
- Jaccard similarity differences when using information content HOT 2
- Breaking change in Synonymizer? HOT 3
- Document instructions for running the obographs-compliance suite HOT 4
- Update SemSimianImplementation and CLI to allow using custom IC maps and frequencies
- Pin ruff checks and codespell checks HOT 1
- Integrate notebooks into sphinx documentation (will break URLs) HOT 2
- Define behavior when conflicting idspaces are specified
- Calculating ICs with an annotation corpus as background is slow
- Making retrieval of axiom annotations for synonyms faster
- Allow passing in of ontology terms on command line when using enrichment in ontology-only mode
- Improve python level access to expression language
- Add a way of detecting all usages of an ontology term
- Duplicated ClassCreation changes in CSV diff output HOT 5
- [OAK diff] Markdown output misformatted on `Mappings` section HOT 1
- vskit expander should support PVs in the MIxS label [id] style HOT 3
- add max depth for `vskit expand` HOT 1
- Sphinx documentation for CLI has disappeared from website HOT 1
- lexmatch --add-label option will update but not create new labels for sql backend
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from ontology-access-kit.