Harshad's Projects
š® An integrative registry of biological databases, ontologies, and nomenclatures.
šŖ What's the latest version for each database?
An ontology of cell types
š Lookup classes and instantiate them with style
CoderGPT
Test `sphintoxetry-cookiecutter`
šø Idiomatic conversion between URIs and compact URIs (CURIEs)
A community-driven ontology for the representation of environments
Source ontology files for the Gene Ontology
Models changes to an ontology or a KG at a high level
Conversion of schemas/templates/metadata to biolinkml
Mondo Disease Ontology
Mondo-OMIM-ORDO mappings
OGER plugin for oaklib.
Spacy plugin for OAK
RO is an ontology of relations for use with biological ontologies
Demo for ontobot-change-agent
Configuration to deploy ontotools using docker compose
sqldf for pandas
PATO - the Phenotype And Trait Ontology
Repository for the Plant Ontology
NER for HPO terms in case studies and literature
š A Python package for using ontologies, terminologies, and biomedical nomenclatures
Pickle files deployed into S3 buckets