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Home Page: https://imagej.net/libs/imglib2/examples
License: Other
Examples how to work with ImgLib2
Home Page: https://imagej.net/libs/imglib2/examples
License: Other
The ImgLib2 v5 API has some breaking changes, which need to be taken into account in these tutorials. I did most of the work already; see https://github.com/imglib/imglib2-tutorials/compare/imglib2-v5. But the LifeForm
class of the game still needs updating.
When running /imglib2-tutorials/src/main/java/Example1b.java
I get this error. (A solution is given below)
Exception in thread "main" java.lang.NoClassDefFoundError: net/imglib2/img/cell/AbstractCellImgFactory
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at io.scif.img.ImgOpener.getHeuristic(ImgOpener.java:543)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:254)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:146)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:113)
at io.scif.img.ImgOpener.openImg(ImgOpener.java:422)
at Example1b.<init>(Example1b.java:67)
at Example1b.main(Example1b.java:95)
Caused by: java.lang.ClassNotFoundException: net.imglib2.img.cell.AbstractCellImgFactory
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 19 more
If I comment out the pegged version in pom.xml
and run mvn clean install
everything works fine.
<dependency>
<groupId>net.imglib2</groupId>
<artifactId>imglib2</artifactId>
<!-- <version>4.3.0</version> I COMMENT THIS TO FIX -->
</dependency>
Thanks to help from @tinevez!
We need a Jenkins job to build imglib-tutorials
whenever changes are pushed.
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