Gregor Sturm's Projects
jekyll repo for gregor-sturm.de
Gene set analysis: benchmark study with simulated and real-life data
Hallmarks of good scientific software
Fast, sensitive and accurate integration of single-cell data with Harmony
Edit Rmarkdown documents in Jupyter notebook
The theme powering gregor-sturm.de
Pithy Jekyll Theme
Jekyll tag that renders base64 codes of images fetched from the web
Proof of concept for a console-based jupyter lab.
Create an online book with Jupyter Notebooks and Jekyll
A two-way integration between Vim and Jupyter Kernels.
JupyterLab computational environment.
R markdown notebooks in Jupyter
The second version of the Kraken taxonomic sequence classification system
Some tools for plotting single-cell data
Forked from https://bitbucket.org/tanaylab/li_et_al_cell_2018_melanoma_scrna
Custom map sources for GEOS (MOBAC compatible)
Minimalist python framework for dealing with biological data
Template repo for minimal nextflow pipelines. Use this instead of manually submitting SGE jobs.
A python package to analyse features and expression data of micro-RNAs.
python module with helper functions for machine learning
Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
Repository to host tool-specific module files for the Nextflow DSL2 community!
Testing building mulled containers for multi-requirement tools.
new basecaller for the oxford nanopore
Package with Minion-basecalling related scripts
Jupyter Notebook Conversion