google-deepmind / multidim-image-augmentation Goto Github PK
View Code? Open in Web Editor NEWThis package provides TensorFlow Ops for multidimensional volumetric image augmentation.
License: Apache License 2.0
This package provides TensorFlow Ops for multidimensional volumetric image augmentation.
License: Apache License 2.0
(Split out from #2 )
#2 (comment)
See error below. This looks like a core Tensorflow (python/eager) issue rather than an issue with the augmentation ops, but opening this issue to record it and track the dependency.
I tried building it with Python 2.7 and TensorFlow 1.12.0 and Apple LLVM version 10.0.0 (clang-1000.11.45.5) on macOS. This is the error that I get:
external/org_tensorflow/tensorflow/stream_executor/stream.cc:2000:20: note: found near match 'mu_' 1 warning generated. ERROR: /private/var/tmp/_bazel_erfannoury/97ea2cf401b618555fb89753b5af4c62/external/org_tensorflow/tensorflow/python/eager/BUILD:10:1: C++ compilation of rule '@org_tensorflow//tensorflow/python/eager:pywrap_tfe_lib' failed (Exit 1) In file included from external/org_tensorflow/tensorflow/python/eager/pywrap_tfe_src.cc:18: In file included from external/org_tensorflow/tensorflow/python/eager/pywrap_tfe.h:22: In file included from external/org_tensorflow/tensorflow/core/lib/core/status.h:23: In file included from bazel-out/darwin-opt/genfiles/external/org_tensorflow/tensorflow/core/lib/core/error_codes.pb.h:9: In file included from external/protobuf_archive/src/google/protobuf/stubs/common.h:39: In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/iostream:38: In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/ios:216: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__locale:518:15: error: C++ requires a type specifier for all declarations char_type toupper(char_type __c) const ^ bazel-out/darwin-opt/genfiles/external/local_config_python/python_include/pyport.h:731:29: note: expanded from macro 'toupper' #define toupper(c) towupper(btowc(c)) ^ In file included from external/org_tensorflow/tensorflow/python/eager/pywrap_tfe_src.cc:18: In file included from external/org_tensorflow/tensorflow/python/eager/pywrap_tfe.h:22: In file included from external/org_tensorflow/tensorflow/core/lib/core/status.h:23: In file included from bazel-out/darwin-opt/genfiles/external/org_tensorflow/tensorflow/core/lib/core/error_codes.pb.h:9: In file included from external/protobuf_archive/src/google/protobuf/stubs/common.h:39: In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/iostream:38: In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/ios:216: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__locale:524:48: error: too many arguments provided to function-like macro invocation const char_type* toupper(char_type* __low, const char_type* __high) const ^
The OSS documentation is currently very thin, it would be useful to add:
Split out from issue #2
Currently only py2.7 is supported, this issue tracks adding py3 support.
see "undefined symbol: PyCObject_Type" below
ERROR: /home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/external/org_tensorflow/ten
sorflow/BUILD:592:1: Executing genrule @org_tensorflow//tensorflow:tensorflow_python_api_gen failed (Exit 1)
Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_au
gmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorfl
ow/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_au
gmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorfl
ow/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 243, in load_module
return load_dynamic(name, filename, file)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 343, in load_dynamic
return _load(spec)
ImportError: /home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/_pywrap_tensorflow_internal.so: undefined symbol: PyCObject_Type
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/tools/api/generator/create_python_api.py", line 27, in <module>
from tensorflow.python.tools.api.generator import doc_srcs
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 243, in load_module
return load_dynamic(name, filename, file)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 343, in load_dynamic
return _load(spec)
ImportError: /home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/_pywrap_tensorflow_internal.so: undefined symbol: PyCObject_Type
When I try to build it using the default configuration file provided, the build fails with the following output:
ERROR: /home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/external/org_tensorflow/ten
sorflow/BUILD:592:1: Executing genrule @org_tensorflow//tensorflow:tensorflow_python_api_gen failed (Exit 1)
Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_au
gmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorfl
ow/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_au
gmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorfl
ow/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 243, in load_module
return load_dynamic(name, filename, file)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 343, in load_dynamic
return _load(spec)
ImportError: /home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/_pywrap_tensorflow_internal.so: undefined symbol: PyCObject_Type
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/tools/api/generator/create_python_api.py", line 27, in <module>
from tensorflow.python.tools.api.generator import doc_srcs
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 243, in load_module
return load_dynamic(name, filename, file)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 343, in load_dynamic
return _load(spec)
ImportError: /home/erfannoury/.cache/bazel/_bazel_erfannoury/2f5f4c4cfb6ca03d34e4841831474c3a/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/_pywrap_tensorflow_internal.so: undefined symbol: PyCObject_Type
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/install_sources#common_installation_problems
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
INFO: Elapsed time: 1827.095s, Critical Path: 148.66s
INFO: 6000 processes: 6000 local.
FAILED: Build did NOT complete successfully
//multidim_image_augmentation:apply_deformation_test NO STATUS
//multidim_image_augmentation:bspline_test NO STATUS
//multidim_image_augmentation:cubic_interpolation_test NO STATUS
//multidim_image_augmentation:deformation_utils_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/apply_deformation_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/apply_tabulated_functions_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/cubic_interpolation1d_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/cubic_interpolation3d_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/random_lut_controlpoints_op_test NO STATUS
FAILED: Build did NOT complete successfully
And when using the latest bazel rules and TensorFlow, build fails with the following output:
ERROR: /home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/external/org_tensorflow/ten
sorflow/BUILD:533:1: Executing genrule @org_tensorflow//tensorflow:tf_python_api_gen_v1 failed (Exit 1)
Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_au
gmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensor
flow/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_au
gmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensor
flow/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 243, in load_module
return load_dynamic(name, filename, file)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 343, in load_dynamic
return _load(spec)
ImportError: /home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/_pywrap_tensorflow_internal.so: undefined symbol: PyCObject_Type
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/tools/api/generator/create_python_api.py", line 27, in <module>
from tensorflow.python.tools.api.generator import doc_srcs
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 243, in load_module
return load_dynamic(name, filename, file)
File "/home/erfannoury/anaconda3/lib/python3.6/imp.py", line 343, in load_dynamic
return _load(spec)
ImportError: /home/erfannoury/.cache/bazel/_bazel_erfannoury/3870f3bce73f7bcb8bc6521ddb648a26/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api_1.runfiles/org_tensorflow/tensorflow/python/_pywrap_tensorflow_internal.so: undefined symbol: PyCObject_Type
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
INFO: Elapsed time: 2011.728s, Critical Path: 152.53s
INFO: 7395 processes: 7395 local.
FAILED: Build did NOT complete successfully
//multidim_image_augmentation:apply_deformation_test NO STATUS
//multidim_image_augmentation:bspline_test NO STATUS
//multidim_image_augmentation:cubic_interpolation_test NO STATUS
//multidim_image_augmentation:deformation_utils_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/apply_deformation_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/apply_tabulated_functions_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/cubic_interpolation1d_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/cubic_interpolation3d_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/random_lut_controlpoints_op_test NO STATUS
FAILED: Build did NOT complete successfully
Any ideas on how can I build the project successfully?
Hello,
I am having some trouble with the installation of the package I basically end up with the following error after a successful bazel build :
tensorflow.python.framework.errors_impl.NotFoundError: python/ops/_augmentation_ops.so: cannot open shared object file: No such file or directory
I am not familiar with Bazel but, from what I understand, the "bazel build/test" command is supposed to generate all the .so files. The test runs without any warning/error, the bazel related directories are all created (bazel-bin, bazel-out, bazel-genfiles,...) but are empty.
The commandline I used is
bazel test --cxxopt="-D_GLIBCXX_USE_CXX11_ABI=0" --config=nativeopt BUILD
I even tried without the --cxxopt="-D_GLIBCXX_USE_CXX11_ABI=0" and it does not work either.
Here is what I also did :
Did I miss something on the installation procedure ?
I installed tf-nightly, and after my successful build, all tests were ok.
However, when I
from multidim_image_augmentation import augmentation_ops
----> 1 from multidim_image_augmentation import augmentation_ops
2 from multidim_image_augmentation import deformation_utils
~/multidim-image-augmentation/multidim_image_augmentation/__init__.py in <module>
18 # TODO: Store the returned object so application code can use it.
19 tf.load_op_library(
---> 20 'multidim_image_augmentation/python/ops/_augmentation_ops.so')
~/anaconda3/envs/pytorch_1.x/lib/python3.7/site-packages/tensorflow/python/framework/load_library.py in load_op_library(library_filename)
56 RuntimeError: when unable to load the library or get the python wrappers.
57 """
---> 58 lib_handle = py_tf.TF_LoadLibrary(library_filename)
59 try:
60 wrappers = _pywrap_python_op_gen.GetPythonWrappers(
NotFoundError: multidim_image_augmentation/python/ops/_augmentation_ops.so: undefined symbol: _ZN10tensorflow15shape_inference14UnchangedShapeEPNS0_16InferenceContextE
Hello, currently I try to build the package with
mkdir -p /tmp/build_output_${USER}
docker run \
-e USER="$(id -u)" \
-u="$(id -u)" \
-v ${PWD}:/src/workspace \
-v /tmp/build_output_${USER}:/tmp/build_output \
-w /src/workspace \
l.gcr.io/google/bazel:latest \
--output_user_root=/tmp/build_output test --python_version=py3 --config=nativeopt //...
I get the following output:
Extracting Bazel installation...
Starting local Bazel server and connecting to it...
Loading:
Loading: 0 packages loaded
Loading: 0 packages loaded
Loading: 0 packages loaded
Loading: 0 packages loaded
...
It goes on indefinitely, if I kill it I get the following:
^C
Bazel caught interrupt signal; shutting down.
INFO: Call stack for the definition of repository 'org_tensorflow' which is a http_archive (rule definition at /tmp/build_output/a08c2e4811c846650b733c6fc815a920/external/bazel_tools/tools/build_defs/repo/http.bzl:292:16):
- /src/workspace/WORKSPACE:26:1
WARNING: Download from https://mirror.bazel.build/github.com/tensorflow/tensorflow/archive/v1.13.1.tar.gz failed: class com.google.devtools.build.lib.bazel.repository.downloader.UnrecoverableHttpException GET returned 404 Not Found
ERROR: An error occurred during the fetch of repository 'org_tensorflow':
java.io.IOException: thread interrupted
ERROR: build interrupted
INFO: Elapsed time: 21.933s
^CINFO: 0 processes.
FAILED: Build did NOT complete successfully (0 packages loaded)
ERROR: Couldn't start the build. Unable to run tests
FAILED: Build did NOT complete successfully (0 packages loaded)
The link described in the error message (https://mirror.bazel.build/github.com/tensorflow/tensorflow/archive/v1.13.1.tar.gz) is indeed dead.
What could be the cause ?
I get an issue when I try to build a package.
ERROR: /home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/external/org_tensorflow/tensorflow/BUILD:592:1: Executing genrule @org_tensorflow//tensorflow:tensorflow_python_api_gen failed (Exit 1)
Traceback (most recent call last):
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/tools/api/generator/create_python_api.py", line 27, in <module>
from tensorflow.python.tools.api.generator import doc_srcs
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/python/__init__.py", line 52, in <module>
from tensorflow.core.framework.graph_pb2 import *
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/core/framework/graph_pb2.py", line 15, in <module>
from tensorflow.core.framework import node_def_pb2 as tensorflow_dot_core_dot_framework_dot_node__def__pb2
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/core/framework/node_def_pb2.py", line 15, in <module>
from tensorflow.core.framework import attr_value_pb2 as tensorflow_dot_core_dot_framework_dot_attr__value__pb2
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/core/framework/attr_value_pb2.py", line 15, in <module>
from tensorflow.core.framework import tensor_pb2 as tensorflow_dot_core_dot_framework_dot_tensor__pb2
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/core/framework/tensor_pb2.py", line 15, in <module>
from tensorflow.core.framework import resource_handle_pb2 as tensorflow_dot_core_dot_framework_dot_resource__handle__pb2
File "/home/maksym/.cache/bazel/_bazel_root/27a245299219db825e5cac653b013711/execroot/multidim_image_augmentation/bazel-out/host/bin/external/org_tensorflow/tensorflow/create_tensorflow.python_api.runfiles/org_tensorflow/tensorflow/core/framework/resource_handle_pb2.py", line 22, in <module>
serialized_pb=_b('\n/tensorflow/core/framework/resource_handle.proto\x12\ntensorflow\"r\n\x13ResourceHandleProto\x12\x0e\n\x06\x64\x65vice\x18\x01 \x01(\t\x12\x11\n\tcontainer\x18\x02 \x01(\t\x12\x0c\n\x04name\x18\x03 \x01(\t\x12\x11\n\thash_code\x18\x04 \x01(\x04\x12\x17\n\x0fmaybe_type_name\x18\x05 \x01(\tBn\n\x18org.tensorflow.frameworkB\x0eResourceHandleP\x01Z=github.com/tensorflow/tensorflow/tensorflow/go/core/framework\xf8\x01\x01\x62\x06proto3')
TypeError: __init__() got an unexpected keyword argument 'syntax'
INFO: Elapsed time: 18.120s, Critical Path: 15.18s
INFO: 114 processes: 114 local.
FAILED: Build did NOT complete successfully
//multidim_image_augmentation:apply_deformation_test NO STATUS
//multidim_image_augmentation:bspline_test NO STATUS
//multidim_image_augmentation:cubic_interpolation_test NO STATUS
//multidim_image_augmentation:deformation_utils_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/apply_deformation_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/apply_tabulated_functions_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/cubic_interpolation1d_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/cubic_interpolation2d_op_test NO STATUS
//multidim_image_augmentation:python/kernel_tests/random_lut_controlpoints_op_test NO STATUS
FAILED: Build did NOT complete successfully
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