Comments (4)
Hi Harish,
Oh it's my bad, In the latest gatb-pipeline update the minia binary didn't support large k values. This will be fixed in an hour or so.
Regarding scaffolding, you guessed right. It uses the contig file from the last k value. That last one, due to the multi-k assembly principle, is always supposed to be the "best" assembly.
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Ah, thanks for the update @rchikhi!
I was worried if I pulled the wrong release or forgot some compile time options ala Velvet!
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There are indeed some compile-time options in minia but gatb-pipeline provides you with a pre-compiled minia.
Apologies the delay, I'm trying to push a commit that updates minia with k up to 256. Github disallows large binaries and somehow minia's binary got much bigger than 100 MB so I have to work around that.
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The correct minia binary (that supported up to k=256) has been put on the repository.
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Related Issues (20)
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