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GATB's Projects

bcalm icon bcalm

compacted de Bruijn graph construction in low memory

bloocoo icon bloocoo

Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.

discosnp icon discosnp

DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

dsk icon dsk

k-mer counting software

gatb-core icon gatb-core

Core library of the Genome Analysis Toolbox with de-Bruijn graph

gatb-core-tuto icon gatb-core-tuto

This project hosts the source code of the GATB-Core Programming Online Tutorial.

gatb-tools-machine icon gatb-tools-machine

Build a single Docker image containing all GATB-Tools ready to be used. This is an official repository, not a mirror.

leon icon leon

Leon - FASTA and FASTQ read compressor

mindthegap icon mindthegap

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

minia icon minia

Minia is a short-read assembler based on a de Bruijn graph

simka icon simka

Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.

takeabreak icon takeabreak

TakeABreak detects inversion breakpoints in read datasets without a reference genome

tigops icon tigops

Manipulation of unitigs and contigs

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