bcalm 2.2.1 on conda is still producing incorrect cDBG about bcalm HOT 8 CLOSED

Very nice work @rchikhi I create a pull request to update bcalm build in bioconda and merge it when all check was passed.

Follow pull request bioconda/bioconda-recipes#16213 to be notify when it's merged in bioconda

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With not yet merge bioconda version of bcalm installable with this command:

conda install -c https://63640-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages bcalm

I didn't reproduce bug

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I have verified that with a regular conda install, it is now fixed. Thank you again!

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hmm yeah. On my computer: master branch is fine, binary v2.2.1 on github is fine, but I confirm that conda's version still has the bug.

Conda's binaries v2.2.0 and v2.2.1 oddly have the same size but they're not bit-equal:

-rwxrwxr-x 1 rayan rayan 30628741 Oct 28  2018 /home/rayan/miniconda3/pkgs/bcalm-2.2.0-hd28b015_3/bin/bcalm
-rwxrwxr-x 1 rayan rayan 30628741 Dec 26  2018 /home/rayan/miniconda3/pkgs/bcalm-2.2.1-hd28b015_0/bin/bcalm
$ diff /home/rayan/miniconda3/pkgs/bcalm-2.2.0-hd28b015_3/bin/bcalm /home/rayan/miniconda3/pkgs/bcalm-2.2.1-hd28b015_0/bin/bcalm 
Binary files /home/rayan/miniconda3/pkgs/bcalm-2.2.0-hd28b015_3/bin/bcalm and /home/rayan/miniconda3/pkgs/bcalm-2.2.1-hd28b015_0/bin/bcalm differ

I figured the culprit:
https://github.com/bioconda/bioconda-recipes/blob/master/recipes/bcalm/build.sh#L8

That conda's bcalm v2.2.1 is built using an ooold gatb-core, one that still has the 2018 bug.

@natir, a fix would be to do a git clone https://github.com/GATB/gatb-core.git && git checkout f25f57bb65db0870ec3c5b14af5e694c7941f567 there.

I keep forgetting that conda distributes a binary that it compiles, not the binary that's from github release.

Apologies for the zombie bug @ctb!

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This version of bcalm's build was merge in bioconda I hope the trouble was fix. If you have another trouble please feel free to tag me in the issue.

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