Comments (2)
Is there any way to run DROP without snakemake?
Snakemake causes many problems and bugs, and is generally not a good system.
Update: If I run drop update it fixes the problem. It is still a bug though. snakemake --unlock should work.
from drop.
Execute snakemake unlock
, without the --
.
DROP is fully based on snakemake.
from drop.
Related Issues (20)
- Running pipeline offline in trusted research environemnt HOT 1
- lymphoblastoid cell lines datasets of gene counts
- Error running aberrantSplicing HOT 2
- Error in AberrantSplicing_pipeline_FRASER_04_fit_hyperparameters_FraseR_R HOT 3
- Error in MAE QC create matrix dna rna cor HOT 3
- CalledProcessError in installRPackages.R HOT 5
- Default running folder is out of space HOT 2
- Chunk options `#+echo` not correctly parsed HOT 1
- Incompatible with `Snakemake>=8` HOT 2
- Writing `rds` files as log can crash Snakemake execution HOT 1
- Error in h(simpleError(msg, call)) HOT 8
- requirementsR.txt referencing HEAD leads to irreproducibility / pipeline breaking HOT 3
- Problem running DROP HOT 2
- Annotation file asks for columns that shouldn't be needed HOT 2
- Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R HOT 10
- Pipeline fails with no significant results (AberrantSplicing_pipeline_FRASER_08_extract_results_FraseR_R) HOT 1
- Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R HOT 2
- Pipeline FAILS when specifying subsets of genes to test HOT 1
- useNames = NA is defunct HOT 4
- conda setup using yaml doesn't work HOT 1
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