Comments (8)
pkrithivasan
commented on July 18, 2024
1
Thank you, I don't get this error any more with v1.3.4. I will try with v1.4.0 today.
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vyepez88
commented on July 18, 2024
Hi, yes, we are aware of this error. We are fixing it. The new release will probably be out next week.
It may be related to this error: #532
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pkrithivasan
commented on July 18, 2024
Hi @vyepez88, please let me know when DROP 1.3.4 will be available. Thanks!
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AtaJadidAhari
commented on July 18, 2024
Hi @pkrithivasan DROP 1.3.4 is available on GitHub now and you can install it using pip:
pip install git+https://github.com/gagneurlab/drop.git
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pkrithivasan
commented on July 18, 2024
Thanks @AtaJadidAhari! When will the yaml file be available on the public server?
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AtaJadidAhari
commented on July 18, 2024
Unfortunately DROP v1.3.4 is not yet updated in conda due to some problems over at bioconda (issues 41025). Once this issue is resolved, we will provide the yaml file on the public server.
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pkrithivasan
commented on July 18, 2024
Thanks @AtaJadidAhari! Looks like the issue was resolved a few hours ago, will keep an eye out for the yaml file.
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vyepez88
commented on July 18, 2024
Hi @pkrithivasan, the yaml file for 1.4.0 is now available. Please try it out and let us know
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Related Issues (20)
- Chunk options `#+echo` not correctly parsed HOT 1
- Incompatible with `Snakemake>=8` HOT 2
- Writing `rds` files as log can crash Snakemake execution HOT 1
- requirementsR.txt referencing HEAD leads to irreproducibility / pipeline breaking HOT 3
- Problem running DROP HOT 2
- Annotation file asks for columns that shouldn't be needed HOT 2
- Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R HOT 10
- Pipeline fails with no significant results (AberrantSplicing_pipeline_FRASER_08_extract_results_FraseR_R) HOT 1
- Error in rule AberrantSplicing_pipeline_Counting_01_1_countRNA_splitReads_samplewise_R HOT 2
- Pipeline FAILS when specifying subsets of genes to test HOT 1
- useNames = NA is defunct HOT 4
- conda setup using yaml doesn't work HOT 1
- QUESTION: specifying samples for sampleExclusionMask in OUTRIDER HOT 2
- No Overview.html file after aberrantSplicing analysis with DROP v1.4.0 HOT 4
- Can't load fds-object from DROP in R HOT 2
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- Error in checkForAndCreateDir HOT 5
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- Error in rule AberrantExpression_pipeline_OUTRIDER_Summary_R HOT 1
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