Problem running DROP about drop HOT 2 CLOSED

Hi,

from the screenshots that you've sent it looks like the dry run was finished successfully. This is the expected behavior of snakemake, and the "missing files" are the outputs that will be created from each rule. For example rule create_dict will be run because its outputs, chr21.dict and chr21_ncbi.dict are missing. All inputs to this rule i.e. chr21_ncbi.fa and chr21.fa, should be already there under Data folder if you ran drop demo.
Please note that you might face further issues when running the pipeline because of the new FRASER version, which will be fixed in the next couple of days once a new version of DROP is released.

Best,

Ata

from drop.

Hi Ata,

thanks for the quick response! I'm not very familiar with snakemake and thought all this missing files were errors popping due to a problem with my DROP installation. Also, thanks for the warning regarding further issues with the new FRASER version. I will wait until the next version if I come up with any issues in case the new DROP version solves it.

Best,

Miriam

from drop.