foi-bioinformatics / repgenr Goto Github PK

Det går av misstag att ge tex dubbla pani värden. Kan hända om man råkar skriva pani isf sani

repgenr derep -wd repgenr_pestis_all/ -t 35 -p 2 -pani 0.96 -pani 0.996 -s 200

Vore bra om det ger ett felmeddelande kanske?

I tried to select a different taxonomic level (-l genus)

But the code stull uses family where that taxonomy name does not exist.

repgenr metadata -r 207.0 -v bac120 -d rep -l genus -tf staphylococcus -wd staphylococcus_repset
[DEBUG] Wrapper CMD:
['metadata.py', '-r', '207.0', '-v', 'bac120', '-d', 'rep', '-l', 'genus', '-tf', 'staphylococcus', '-wd', 'staphylococcus_repset']

Downloading metadata-file from GTDB...
Parsing metadata-file...
Parsing target and other organisms at specified level...
Did not find any entries in database for input target family="staphylococcus" genus="None" species="None" at taxonomic level "genus"