fmaguire / wolfpsort Goto Github PK

==Note from maintainer==
As the original website has been down for more than a month and the license
allows redistribution for academic purposes I am rehosting so that other 
academics can find and use this tool locally if they need it. 
All rights as per original license and belonging to Paul Horton - FM

==Note from Author==
F. Maguire was kind enough to set this up years ago when I was completely neglecting WoLF PSORT due to various distractions.  Thank you F. Maguire!

He was also kind enough to hand it off to me a while later.
I have seldom updated it, but recently (2023) updated the license to GPLv3 and
added more mention of the large contribution of Kenta Nakai, the original creator of PSORT,
to this project.


==Original README==
WoLF PSORT Package Command Line Version 0.2 README document
Author: Paul Horton
Copyright: All Rights Reserved
Created: 2005/9/2
Last Modified: $Date: 2006/08/28 10:43:18 $


START

Please first read this documents:

  ./CITATION
  ./INSTALL


EXECUTION

This package contains two scripts to be directly executed:

  ./bin/runWolfPsortSummary, and ./bin/runWolfPsortHtmlTables


For a simple, text based, summarized prediction result use:

  ./bin/runWolfPsortSummary fungi < ./bin/testQuery.fasta


# NOTE THIS DOESN'T WORK AUTOMATICALLY #
For a more elaborate and informative html version use: 

  ./bin/runWolfPsortHtmlTables fungi testOut/ queryName < ./bin/testQuery.fasta

In this case the results will be written to the directory "testOut/"
(which use should create first, the script will not create it for you.

To view the results point an html browser at testOut/htdocs/results/queryName.html