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followers: 96.0 following: 34.0 repos: 184.0 gists: 8.0

Name: Finlay Maguire

Type: User

Company: Community Health & Epidemiology / Computer Science, Dalhousie University

Bio: Assistant Professor (Computer Science & Epidemiology). Working on infectious disease genomic epidemiology & data-driven solutions to social crises

Location: Halifax, Nova Scotia, Canada

Blog: maguire-lab.github.io

From anuraghazra's github-readme-stats project.

50%: Microbial bioinformatics, antimicrobial resistance, metagenomics, phylogenetics, machine learning. Working with CARD, PHAC-NML, IRIDA, PHA4GE, CanCOGeN.

50%: Using data analytics/science methods in interdisciplinary collaborations to try and foster positive social impacts, e.g., working with local shelters to identify gaps in provision, physicians to improve healthcare among refugee women, and psychologists to explore effects of social media on language development in autistic individuals.

See Google Scholar for a list of publications or my website for an intermittently updated version of my academic CV.

Finlay Maguire's Projects

2013-11-14-exeter

Website and course materials for the Software Carpentry boot camp held at Exeter on the 14 November 2013

aafc_salmonella

Analyses for AAFC Salmonella paper

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

abuse_foipop

amplicon_scheme_hasher

Simple tool for hashing and comparing hashes of amplicon scheme bed files.

amr_analysis_pipeline

A pipeline written in bash script that combines python and other tools.

amr_context_demo_workflow

amr_metadata_project

amr_metagenome_simulator

Nextflow workflow for simulating a metagenome with inserted AMR genes

amr_pcr

High-throughput assessment of standardised AMR primers using VAware

amr_training_workshop_practical

Practical exercise for the JPI-AMR/PHA4GE/CLIMB AMR Genomics Training Workshop

animus

Fast ANI calculation using vsearch GNU

anvio

An analysis and visualization platform for 'omics data

ariba

Antimicrobial Resistance Identification By Assembly

arxiv-sanity-preserver

Web interface for browsing, search and filtering recent arxiv submissions

autoprotocol-core

bactopia

A flexible pipeline for complete analysis of bacterial genomes

bactopia.github.io

Bactopia Documentation

bactopia_report

Script to generate report from bactopia output

bandageblast

BLAST functionality of Bandage

bayehem

Gaussian Process based Bayesian Optimisation of NGS Assembly.

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformaticturtorial

bohra

A pipeline for bioinformatics analysis of bacterial genomes

bootstrap_split_frequencies

Quick script proof of concept for phylo project

bridger_assembler

Rehost of Bridger Assembler from Sourceforge

canonical-correlation-forest

Scikit-Learn-Contrib compatible implementation of the Canonical Correlation Forest algorithm

card-live-dashboard

card-phylo

Workflow for generating reference phylogenies of AMR sequences in CARD

casualisation_analysis

UK University Casualisation Statistics analysis vs Performance

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