Name: Finlay Maguire
Type: User
Company: Community Health & Epidemiology / Computer Science, Dalhousie University
Bio: Assistant Professor (Computer Science & Epidemiology). Working on infectious disease genomic epidemiology & data-driven solutions to social crises
Location: Halifax, Nova Scotia, Canada
Blog: maguire-lab.github.io
Finlay Maguire's Projects
Northwood Frailty Microbiome Study
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Analysis and plotting code use for an analysis of incontinence in nulliparas using the NHANES database
A biological data mining project as part of a Masters degree at the University of Edinburgh.
Protein Alignment and Detection Interface
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Repository for suggesting new lineages that should be added to the current scheme
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
Simple script to install a specific pangolin (and dependencies) versions
Paired Arrangement of Reads via Kmeans On Unlabelled RNA-Seq
UCL PhD thesis in Bioinformatics (supervised by Thomas A. Richards and Max Telford)
A rabbit hole from some questionable verbatim text chunks
Webserver and command line tool for annotating engineered plasmids
The interactive graphing library for Python (includes Plotly Express) :sparkles:
Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
Secretome prediction pipeline
Schemes for SarsCoV2 sequencing
PSORTb command-line docker - Dockerfile and "docker run" wrapper
Repository to contain pdf copies of my publications
Exercises from "Test-Driven Development with Python"
Quick dirty way of mapping ResFinder and NCBI AMR databases to CARD's ARO
A collection of random scripts I have made over the years, barely any documentation though. Enjoy, be careful!
Random 10k sampled test data for MEM/Recomb idea
Resistance Gene Identifier (RGI)
Quick dirty analysis of distribution of Rhodes scholarships by constituencies
Repo to contain attempts at learning rust
Code and analyses for ASM msystems paper.
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent