fcp-indi Goto Github PK

.github

This repository houses default community health files for GitHub repositories for the 1000 Functional Connectomes Project, the International Neuroimaging Data-Sharing Initiative and the Computational Neuroimaging Lab at the Child Mind Institute.

app-c-pac-brainlife.io

This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.

auto-qa

Automated quality assurance measuring for brain imaging data

awesomri-qc

A curated list of measures, tools, and references for MRI quality control (QC).

bids_scripts

Scripts used to process Rockland sample scans into BIDS format.

brainimagingpipelines

BIPs

c-pac

Configurable Pipeline for the Analysis of Connectomes

c-pac_gui

A new GUI for C-PAC

c-pac_regression_dashboard

Dashboard for C-PAC regression suite correlations

c-pac_templates

Templates and atlases that aren't included in Neuroparc and are packaged in C-PAC

c-pac_tutorials

Tutorials for C-PAC

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

corr_qc

QC Measures for CoRR

corr_webpages

cpac

A convenience wrapper for https://github.com/FCP-INDI/C-PAC that provides a simple command line interface.

cpac-config

Various configuration files (Vagrantfiles, provisioning scripts) and documentation for the C-PAC testing environment.

cpac-development

cpac_cloud

Resources and tutorials for using C-PAC with the AWS cloud

cpac_outputs_to_bids

Configurable script to convert CPAC outputs to BIDS format, greatly reduces the amount of storage needed for outputs, and works with BIDS APPS!

cpac_regtest_pack

cpac_run_logs

Repository for information about C-PAC runs.

data-from-papers

An index linking journal publications to the individual datasets from data-sharing repositories that they used.

dki_preproc

epi-distcorr

fcp-indi.github.io

Github Pages Repo for FCP-INDI

fcp_indi_bucket_maintenance

Scripts, how tos, FAQs, and issues related to maintaining the FCP-INDI public S3 bucket.

hpc_benchmark

Your friendly neighborhood lightweight utility for monitoring resource usage of your pipelines and analyses.

indi-tools

Utilities developed for interaction with the AWS cloud

indi_bidsification

Scripts related to the process of converting INDI datasets into BIDS format.

ndar-dev

Software development for NDAR