Genetic building of teeth and odontodes

Review of gene expression patterns during tooth and odontode development in vertebrates, with a focus on the small-spotted catshark Scyliorhinus canicula.

Related publication: Berio F, Debiais-Thibaud M. Evolutionary developmental genetics of teeth and odontodes in jawed vertebrates: a perspective from the study of elasmobranchs. J Fish Biol. 2020;1–13. https://doi.org/10.1111/jfb.14225

This dataset provides an overview of gene expressions characterizing the development of odontodes and tooth-like structures in vertebrates. We reference gene expressions from in situ hybidizations compared to those tested in S. canicula.

Developmental stages

Sources

For the interspecific table

Year	Articles, Theses, and Reports	Authors	Ref n°
1987	In vivo expression of mRNA for the Ca++-binding protein SPARC (osteonectin) revealed by in situ hybridization.	Holland et al.	1
1993	Transient expression of type III collagen by odontoblasts: developmental changes in the distribution of Pro-α1 (III) and Pro-α1 (I) collagen mRNAs in dental tissues	Lukinmaa et al.	2
1993	Identification of BMP-4 as a signal mediating secondary induction between epithelial and mesenchymal tissues during early tooth development	Vainio et al.	3
1994	Differential and overlapping expression domains of Dlx-2 and Dlx-3 suggest distinct roles for Distal-less homeobox genes in craniofacial development	Robinson and Mahon	4
1995	Hedgehog and Bmp genes are coexpressed at many diverse sites of cell–cell interaction in the mouse embryo	Bitgood and McMahon	5
1995a	Midkine (MK), a heparin-binding growth/differentiation factor, is regulated by retinoic acid and epithelial-mesenchymal interactions in the developing mouse tooth, and affects cell proliferation and morphogenesis.	Mitsiadis et al.	6
1995b	Expression of the heparin-binding cytokines, midkine (MK) and HB-GAM (pleiotrophin) is associated with epithelial-mesenchymal interactions during fetal development and organogenesis	Mitsiadis et al.	7
1996	The enamel knot as a signaling center in the developing mouse tooth	Vaahtokari et al.	8
1997	Expression patterns of bone morphogenetic proteins (Bmps) in the developing mouse tooth suggest roles in morphogenesis and cell differentiation	Åberg et al.	9
1997	Antagonistic interactions between FGF and BMP signaling pathways: a mechanism for positioning the sites of tooth formation	Neubüser et al.	10
1998	The Shh signalling pathway in tooth development: defects in Gli2 and Gli3 mutants	Hardcastle et al.	11
1998	The life history of an embryonic signaling center: BMP-4 induces p21 and is associated with apoptosis in the mouse tooth enamel knot	Jernvall et al.	12
1998	Association of developmental regulatory genes with the development of different molar tooth shapes in two species of rodents	Keränen et al.	13
1998	Responsiveness of developing dental tissues to fibroblast growth factors: expression of splicing alternatives of FGFR1, -2, -3, and of FGFR4; and stimulation of cell proliferation by FGF-2, -4, -8, and -9	Kettunen et al.	14
1998	Expression and function of FGFs-4, -8, and -9 suggest functional redundancy and repetitive use as epithelial signals during tooth morphogenesis	Kettunen and Thesleff	15
2000	Associations of FGF-3 and FGF-10 with signaling networks regulating tooth morphogenesis	Kettunen et al.	16
2000	Antagonistic signals between BMP4 and FGF8 Define the expression of Pitx1 and Pitx2 in mouse tooth-forming anlage	St Amand et al.	17
2000	Edar/Eda interactions regulate enamel knot formation in tooth morphogenesis	Tucker et al.	18
2000	Expression of Dlx genes during the development of the murine dentition	Zhao et al.	19
2001	TNF signaling via the ligand–receptor pair ectodysplasin and Edar controls the function of epithelial signaling centers and is regulated by Wnt and Activin during tooth organogenesis	Laurikkala et al.	20
2004	Runx2 mediates FGF signaling from epithelium to mesenchyme during tooth morphogenesis	Åberg et al.	21
2004	Conserved deployment of genes during odontogenesis across osteichthyans	Fraser et al.	22
2004	Fgf signaling is required for zebrafish tooth development	Jackman et al.	23
2006	Expression of Dlx genes during the development of the zebrafish pharyngeal dentition: evolutionary implications	Borday-Birraux et al.	24
2006a	Gene deployment for tooth replacement in the rainbow trout (Oncorhynchus mykiss): a developmental model for evolution of the osteichthyan dentition	Fraser et al.	25
2006b	Developmental and evolutionary origins of the vertebrate dentition: molecular controls for spatio-temporal organisation of tooth sites in osteichthyans	Fraser et al.	26
2006	Conservation and divergence of Bmp2a, Bmp2b, and Bmp4 expression patterns within and between dentitions of teleost fishes	Wise and Stock	27
2007	Development of oral and pharyngeal teeth in the medaka (Oryzias latipes): comparison of morphology and expression of eve1 gene	Debiais-Thibaud et al.	28
2008	Low divergence in Dlx gene expression between dentitions of the medaka (Oryzias latipes) versus high level of expression shuffling in osteichtyans	Debiais-Thibaud et al.	29
2008	A periodic pattern generator for dental diversity	Fraser et al.	30
2008	Unique and Shared Gene Expression Patterns in Atlantic Salmon (Salmo salar) Tooth Development	Huysseune et al.	34
2010	Hedgehog signaling is required at multiple stages of zebrafish tooth development	Jackman et al.	31
2013	Common developmental pathways link tooth shape to regeneration	Fraser et al.	32
2015	Hedgehog signaling regulates dental papilla formation and tooth size during zebrafish odontogenesis	Yu et al.	33

For the intraspecific table

Year	Articles, Theses, and Reports	Authors	Ref n°
2011	The homology of odontodes in gnathostomes: insights from Dlx gene expression in the dogfish, Scyliorhinus canicula	Debiais-Thibaud et al.	1
2015	Tooth and scale morphogenesis in shark: an alternative process to the mammalian enamel knot system	Debiais-Thibaud et al.	2
2016	Sox2+ progenitors in sharks link taste development with the evolution of regenerative teeth from denticles	Martin et al.	3
2016	An ancient dental gene set governs development and continuous regeneration of teeth in sharks	Rasch et al.	4
2017	Developing an ancient epithelial appendage: FGF signalling regulates early tail denticle formation in sharks	Cooper et al.	5
2018	Evolution of dental tissue mineralization: an analysis of the jawed vertebrate SPARC and SPARC-L families	Enault et al.	6

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