faith-hplc Goto Github PK

10x-scatac-2019

Publication Page for Satpathy*, Granja* et al 2019

allhic_components

Some components that speed up and reduce resource cost for original ALLHiC

ampril-genomes

scripts for the project of seven thaliana genomes assembly

an-genome-construction-and-population-structure-variation-calling-pipeline

Pan-genome Construction and Population Structure Variation Calling pipeline

awesome-cheatsheets

超级速查表 - 编程语言、框架和开发工具的速查表，单个文件包含一切你需要知道的东西 :zap:

bioscripts

several scripts for bioinformatics

circrna-pipeline

Cancer circRNA identification pipeline with an ensemble approach

cnnee

CNNEE is a pipeline to accurately identify pig enhancers and eRNAs.

codes-for-population-epigenetics-for-rice-evolution

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dna-msfs_teo

mSFS using a teosinte natural population

easymicrobiomer

Using R language in microbiome analysis

eqtl

eqtl-analysis

Expression quantitative traits locus analysis using EMMAX software

eqtl-peptide

gatk-sv

A structural variation pipeline for short-read sequencing

genomics

Scripts behind published genomics analysis

getaurora

vpn

glk-project

goldpheasant-t2t

T2T genome assembly of a female gold pheasant

gwas_scripts

Codebook from my GWAS cookbook

hawe2021_meqtl_analyses

Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics

hemtools

HemTools: a collection of NGS pipelines and bioinformatic analyses

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

huasmalltools

Some bioinformic domestic scripts.

ing-simmons_et_al_dorsoventral_3d_genome

itips

Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data

learnpython

以撸代码的形式学习Python

lic_et_al_mr_crosstalk

m6a_evolution

A bioinformatics pipeline for the evolution analysis of m6A in plants