euphrasiologist Goto Github PK

nu_plugin_bio

Bioinformatics plugin for nushell.

nu_plugin_plot

Plot numeric lists in Nushell as part of a pipeline

nu_plugin_regex

nu_scripts

A place to share Nushell scripts with each other

oxygraphis

An ecological graph library and CLI.

phenotypic_plasticity_euphrasia

The source code for analyses on "Life history evolution and phenotypic plasticity in parasitic eyebrights (Euphrasia, Orobanchaceae)"

pixel-art

plotutils

Functions to help plot stuff in JavaScript.

pop_dynamics

Functions of common equations (or modifications thereof) in biology, covering ecological, disease and evolutionary dynamics.

puccinia

refer

A cli tool to store a local mutable bibliographic database.

rosalind_scripts

My take (and sometimes snatching ideas from elsewhere) on the rosalind problems (http://rosalind.info/)

rust-midi-synth

A command-line midi synth in Rust

site

My website living on a Raspberry Pi

structure

Quick and easy STRUCTURE parse and plot.

telomeric-trim

Get reads with telomeric repeat, trim the repeat and orient the trimmed end as the new beginning

thesis

My PhD thesis, submitted in 2020 on the subject of taxonomic complexity in eyebrights and the British flora. This repository contains the markdown and latex documents, as well as the shell scripts to generate the final thesis.

tidk_paper

trfr

Parse output from tandem repeat finder

vcf_filtering

BASH scripts to filter VCF files for missing data in both SNP's and individuals (taxa).

vcf_to_gbs2ploidy

Format a VCF file, so it is compatible in the gbs2ploidy pipeline (https://CRAN.R-project.org/package=gbs2ploidy), and the paper (doi: https://doi.org/10.1111/1755-0998.12657)

vcvglmm

Convenience functions to extract and manipulate variance covariance matrices from random effects from the packages lme4 and MCMCglmm.

web_mining

Examples of methods to mine websites (among others) for their underlying databases.

winterbotany

Keys for Shrubs and Trees in the Winter