Code Monkey home page Code Monkey logo

autoqc_jython's Introduction

Hi! I'm Erick.

I currently manage a small (but powerful) team of imaging experts at The Jackson Laboratory, a biomedical research nonprofit. We work on institution-wide imaging support: think more "how do we get tool X to work in our environment" or "how do we teach people the best way to apply deep learning methods to their images", less "we will develop a custom tool for your specific research project". Our team is 100% focused on supporting open-source tools.

What does that mean in practice?

A lot of my time is dedicated to OMERO, the imaging data management platform we use. Our team is responsible for keeping it running, drive adoption and make it easier for folks to use it. A (different) lot of my time is dedicated to training people on how to use open-source image analysis/data management tools. There is also a lot of talking to faculty and researchers about what they need, and how we can support them.

Here are some projects I have been working on:

  • ezomero is a convenience-layer library to interact with OMERO servers using Python. I am currently the main developer and maintainer.
  • omero-cli-transfer is a utility tool for transfering data between OMERO servers, preserving hierarchies, annotations and regions of interest. I am also the main developer and maintainer.

What else do I do?

autoqc_jython's People

Contributors

erickmartins avatar

Stargazers

 avatar  avatar  avatar

Watchers

 avatar  avatar  avatar  avatar  avatar

Forkers

warwickcamdu

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.