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Hi! I'm Erick.

I currently manage a small (but powerful) team of imaging experts at The Jackson Laboratory, a biomedical research nonprofit. We work on institution-wide imaging support: think more "how do we get tool X to work in our environment" or "how do we teach people the best way to apply deep learning methods to their images", less "we will develop a custom tool for your specific research project". Our team is 100% focused on supporting open-source tools.

What does that mean in practice?

A lot of my time is dedicated to OMERO, the imaging data management platform we use. Our team is responsible for keeping it running, drive adoption and make it easier for folks to use it. A (different) lot of my time is dedicated to training people on how to use open-source image analysis/data management tools. There is also a lot of talking to faculty and researchers about what they need, and how we can support them.

Here are some projects I have been working on:

  • ezomero is a convenience-layer library to interact with OMERO servers using Python. I am currently the main developer and maintainer.
  • omero-cli-transfer is a utility tool for transfering data between OMERO servers, preserving hierarchies, annotations and regions of interest. I am also the main developer and maintainer.

What else do I do?

Erick Martins Ratamero's Projects

autoqc_extras icon autoqc_extras

Extra utilities (e.g. plotting) for data generated by autoQC.

bolaobot icon bolaobot

tentando automatizar o bolão fña (Se você não sabe do que se trata esse repositório não é pra você)

dota_gametheory icon dota_gametheory

A (mostly failed) attempt to solve Dota 2's Captains Mode as an extended-form game.

ezomero icon ezomero

A module with convenience functions for writing Python code that interacts with OMERO.

genalg_dota icon genalg_dota

I am trying to optimize hero picking in dota with genetic algorithms.

intro_programming icon intro_programming

A set of IPython notebooks and learning resources for an Introduction to Programming class, focusing on Python.

kit icon kit

KiT is a MATLAB program for tracking kinetochores in microscopy movies in 2D or 3D, and in multiple channels.

kymo-tracing icon kymo-tracing

Code for tracing kymographs based on gradient magnitude

moped_python icon moped_python

a model of dynamics in competitive cycling pelotons. now in Python.

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