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R API for genome graphs
The gGnome package provides a flexible, queriable R interface to graphs
and walks of reference genomic intervals. gGnome is written in the R6 object
oriented standard and built around a powerful GenomicRanges, data.table, and
igraph backend, and thus supports agile interaction with graphs consisting of
hundreds of thousands of nodes and edges.
-
Install R-3.6 or up
-
Install devtools
install.packages('devtools')
install.packages('testthat')
- Install gGnome and dependent packages
## allows dependencies that throw warnings to install
Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS = TRUE)
devtools::install_github('mskilab/gGnome')
Marcin Imieliński - Associate Professor, Weill Cornell Medicine Core Member, New York Genome Center.
Xiaotong Yao - (as) Graduate Research Assistant, Weill Cornell Medicine, New York Genome Center.
Zi-Ning Choo - Graduate Research Assistant, Weill Cornell Medicine, New York Genome Center.
Alon Shaiber - Genomics Data Scientist, Weill Cornell Medicine, New York Genome Center.
Joseph DeRose - (as) Undergraduate Research Assistant, New York Genome Center.
Rick Mortensen - (as) Undergraduate Research Assistant, New York Genome Center, Memorial Sloan-Kettering Cancer Center
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