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5loclung

Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung

altair

Declarative statistical visualization library for Python

anndata

Annotated data.

annotated_deep_learning_paper_implementations

🧑‍🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

anvilworkshop

AnVIL/Terra workshop for BioC2020

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

ascat

ASCAT copy number R package

asgard

asuratbi

A pipeline especially built for computing several single-cell datasets

asyncloadingscreen

Async Loading Screen is a free and open-source plugin for Unreal Engine. Async Loading Screen allows you to easily configure a Loading Screen System in the project settings, and automatically add a Loading Screen whenever you open a new level, without Level Streaming.

augur

Cell type prioritization in single-cell data

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

awesome-nanopore

A curated list of awesome nanopore analysis tools.

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome_spatial_omics

tools and notes for spatial omics

backspin

Biclustering algorithm

bget

Portable command-line tool to query bioinformatics APIs, data, databases and files.

bioc_2020_tidytranscriptomics

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

biopython

Official git repository for Biopython (originally converted from CVS)

biorookie_article

Synchronize the bioinformatics knowledge-sharing content in the WeChat public account to GitHub to facilitate everyone's systematic learning

blitzgsea

Fast GSEA implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.

brca_cell_atlas

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

bsseeker2

A versatile aligning pipeline for bisulfite sequencing data

bulk2space

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

cancersea

a simple R data package for curated cancer pathway-specific gene lists

cbnplot

Bayesian network plot for the enrichment analysis results

celescope

Single Cell Analysis Pipelines