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View Code? Open in Web Editor NEWA conda-smithy repository for r-stringi.
License: BSD 3-Clause "New" or "Revised" License
r-stringi-feedstock's Issues
@conda-forge-admin, please rerender
Additional comment:
Opening PR for Rebuild for r-base 4.4 and UCRT mingw toolchain migration (which tripped over the verbatim m2w64-icu in this recipe).
r-stringi 1.7.6 depends on old libicui18n.so.58
Solution to issue cannot be found in the documentation.
- I checked the documentation.
Issue
Trying to load the package:
> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/opt/quarantine/software/R/4.2.0/r-base/lib/R/library/stringi/libs/stringi.so':
libicui18n.so.58: cannot open shared object file: No such file or directory
Installed packages
# packages in environment at /opt/quarantine/software/R/4.2.0/r-base:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
_sysroot_linux-64_curr_repodata_hack 3 h69a702a_13 conda-forge
alsa-lib 1.2.6.1 h7f98852_0 conda-forge
argcomplete 3.1.1 pyhd8ed1ab_0 conda-forge
arpack 3.7.0 hdefa2d7_2 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge
binutils_impl_linux-64 2.38 h2a08ee3_1
binutils_linux-64 2.38.0 hc2dff05_0
bioconductor-annotate 1.76.0 r42hdfd78af_0 bioconda
bioconductor-annotationdbi 1.60.0 r42hdfd78af_0 bioconda
bioconductor-biobase 2.58.0 r42ha9d7317_1 bioconda
bioconductor-biocgenerics 0.44.0 r42hdfd78af_0 bioconda
bioconductor-biocparallel 1.32.5 r42hf17093f_1 bioconda
bioconductor-biocviews 1.66.0 r42hdfd78af_0 bioconda
bioconductor-biostrings 2.66.0 r42ha9d7317_1 bioconda
bioconductor-data-packages 20230718 hdfd78af_1 bioconda
bioconductor-delayedarray 0.24.0 r42ha9d7317_1 bioconda
bioconductor-deseq2 1.38.0 r42hf17093f_1 bioconda
bioconductor-edger 3.40.0 r42hf17093f_1 bioconda
bioconductor-genefilter 1.80.0 r42ha1e849b_1 bioconda
bioconductor-geneplotter 1.76.0 r42hdfd78af_0 bioconda
bioconductor-genomeinfodb 1.34.9 r42hdfd78af_0 bioconda
bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0 bioconda
bioconductor-genomicranges 1.50.0 r42ha9d7317_1 bioconda
bioconductor-graph 1.76.0 r42ha9d7317_1 bioconda
bioconductor-hsmmsinglecell 1.18.0 r42hdfd78af_0 bioconda
bioconductor-iranges 2.32.0 r42ha9d7317_1 bioconda
bioconductor-keggrest 1.38.0 r42hdfd78af_0 bioconda
bioconductor-limma 3.54.0 r42ha9d7317_1 bioconda
bioconductor-mast 1.24.0 r42hdfd78af_0 bioconda
bioconductor-matrixgenerics 1.10.0 r42hdfd78af_0 bioconda
bioconductor-monocle 2.26.0 r42hf17093f_1 bioconda
bioconductor-qvalue 2.30.0 r42hdfd78af_0 bioconda
bioconductor-rbgl 1.74.0 r42hf17093f_1 bioconda
bioconductor-rhtslib 2.0.0 r42ha9d7317_1 bioconda
bioconductor-rots 1.26.0 r42hf17093f_1 bioconda
bioconductor-rsamtools 2.14.0 r42hf17093f_1 bioconda
bioconductor-s4vectors 0.36.0 r42ha9d7317_1 bioconda
bioconductor-singlecellexperiment 1.20.0 r42hdfd78af_0 bioconda
bioconductor-summarizedexperiment 1.28.0 r42hdfd78af_0 bioconda
bioconductor-sva 3.46.0 r42ha9d7317_1 bioconda
bioconductor-variancepartition 1.28.0 r42hdfd78af_0 bioconda
bioconductor-xvector 0.38.0 r42ha9d7317_1 bioconda
bioconductor-zlibbioc 1.44.0 r42ha9d7317_2 bioconda
blas 1.0 openblas
bwidget 1.9.14 ha770c72_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.19.1 hd590300_0 conda-forge
ca-certificates 2023.7.22 hbcca054_0 conda-forge
cairo 1.16.0 hb05425b_5
cffi 1.15.1 py311h409f033_3 conda-forge
curl 7.86.0 h2283fc2_1 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freetype 2.12.1 hca18f0e_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
gcc_impl_linux-64 11.2.0 h1234567_1
gcc_linux-64 11.2.0 h5c386dc_0
gdk-pixbuf 2.42.8 hff1cb4f_1 conda-forge
geos 3.12.0 h59595ed_0 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
gfortran_impl_linux-64 11.2.0 h7a446d4_16 conda-forge
gfortran_linux-64 11.2.0 hc2dff05_0
giflib 5.2.1 h0b41bf4_3 conda-forge
glib 2.74.1 h6239696_0 conda-forge
glib-tools 2.74.1 h6239696_0 conda-forge
glpk 5.0 h445213a_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
graphite2 1.3.14 h295c915_1
gsl 2.7 he838d99_0 conda-forge
gxx_impl_linux-64 11.2.0 h1234567_1
gxx_linux-64 11.2.0 hc2dff05_0
harfbuzz 6.0.0 h8e241bc_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
igraph 0.10.2 ha1f048c_0 conda-forge
jpeg 9e h0b41bf4_3 conda-forge
jq 1.6 h36c2ea0_1000 conda-forge
kernel-headers_linux-64 4.18.0 he073ed8_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.19.3 h08a2579_0 conda-forge
lcms2 2.14 h6ed2654_0 conda-forge
ld_impl_linux-64 2.38 h1181459_1
lerc 4.0.0 h27087fc_0 conda-forge
libblas 3.9.0 17_linux64_openblas conda-forge
libcblas 3.9.0 17_linux64_openblas conda-forge
libcups 2.3.3 h3e49a29_2 conda-forge
libcurl 7.86.0 h2283fc2_1 conda-forge
libdeflate 1.14 h166bdaf_0 conda-forge
libedit 3.1.20221030 h5eee18b_0
libev 4.33 h516909a_1 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.4 h6a678d5_0
libgcc-devel_linux-64 11.2.0 h1234567_1
libgcc-ng 13.1.0 he5830b7_0 conda-forge
libgfortran-ng 13.1.0 h69a702a_0 conda-forge
libgfortran5 13.1.0 h15d22d2_0 conda-forge
libglib 2.74.1 h7a41b64_0 conda-forge
libglu 9.0.0 he1b5a44_1001 conda-forge
libgomp 13.1.0 he5830b7_0 conda-forge
libhwloc 2.8.0 h32351e8_1 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 17_linux64_openblas conda-forge
libnghttp2 1.52.0 h61bc06f_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libopenblas 0.3.23 pthreads_h80387f5_0 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
librsvg 2.54.4 h7abd40a_0 conda-forge
libsqlite 3.43.0 h2797004_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-devel_linux-64 11.2.0 h1234567_1
libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge
libtiff 4.4.0 h82bc61c_5 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libv8 8.9.83 h7465d70_2 conda-forge
libwebp-base 1.3.1 hd590300_0 conda-forge
libxcb 1.16 hd590300_0 conda-forge
libxml2 2.9.14 h22db469_4 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
make 4.3 hd18ef5c_1 conda-forge
metis 5.1.1 h59595ed_1 conda-forge
mpfr 4.2.0 hb012696_0 conda-forge
ncurses 6.4 hcb278e6_0 conda-forge
nlopt 2.7.1 py311he53e775_3 conda-forge
numpy 1.25.2 py311h64a7726_0 conda-forge
oniguruma 6.9.8 h166bdaf_0 conda-forge
openjdk 11.0.1 h516909a_1016 conda-forge
openssl 3.1.3 hd590300_0 conda-forge
pandoc 3.1.3 h32600fe_0 conda-forge
pango 1.50.14 hd33c08f_0 conda-forge
pcre 8.45 h9c3ff4c_0 conda-forge
pcre2 10.37 hc3806b6_1 conda-forge
pip 23.2.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h36c2ea0_0 conda-forge
prompt-toolkit 3.0.39 pyha770c72_0 conda-forge
prompt_toolkit 3.0.39 hd8ed1ab_0 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.16.1 pyhd8ed1ab_0 conda-forge
python 3.11.0 he550d4f_1_cpython conda-forge
python_abi 3.11 3_cp311 conda-forge
pyyaml 6.0.1 py311h459d7ec_0 conda-forge
r-abind 1.4_5 r42hc72bb7e_1005 conda-forge
r-aod 1.3.2 r42ha770c72_2 conda-forge
r-arm 1.13_1 r42hc72bb7e_2 conda-forge
r-arrayhelpers 1.1_0 r42hc72bb7e_3 conda-forge
r-askpass 1.1 r42h57805ef_4 conda-forge
r-assertthat 0.2.1 r42hc72bb7e_4 conda-forge
r-backports 1.4.1 r42h57805ef_2 conda-forge
r-base 4.2.1 h7880091_2 conda-forge
r-base64enc 0.1_3 r42h57805ef_1006 conda-forge
r-base64url 1.4 r42h57805ef_1006 conda-forge
r-batchtools 0.9.17 r42h57805ef_1 conda-forge
r-bayestestr 0.13.1 r42hc72bb7e_1 conda-forge
r-beeswarm 0.4.0 r42h57805ef_3 conda-forge
r-bh 1.81.0_1 r42hc72bb7e_1 conda-forge
r-bigassertr 0.1.6 r42hc72bb7e_1 conda-forge
r-biglm 0.9_2.1 r42h61816a4_2 conda-forge
r-bigparallelr 0.3.2 r42hc72bb7e_2 conda-forge
r-bigstatsr 1.5.12 r42h08d816e_2 conda-forge
r-biocmanager 1.30.22 r42hc72bb7e_0 conda-forge
r-bit 4.0.5 r42h57805ef_1 conda-forge
r-bit64 4.0.5 r42h57805ef_2 conda-forge
r-bitops 1.0_7 r42h57805ef_2 conda-forge
r-blob 1.2.4 r42hc72bb7e_1 conda-forge
r-boot 1.3_28.1 r42hc72bb7e_1 conda-forge
r-brew 1.0_8 r42hc72bb7e_2 conda-forge
r-brio 1.1.3 r42h57805ef_2 conda-forge
r-broom 1.0.5 r42hc72bb7e_1 conda-forge
r-bslib 0.5.1 r42hc72bb7e_0 conda-forge
r-cachem 1.0.8 r42h57805ef_1 conda-forge
r-callr 3.7.3 r42hc72bb7e_1 conda-forge
r-car 3.1_2 r42hc72bb7e_1 conda-forge
r-cardata 3.0_5 r42hc72bb7e_2 conda-forge
r-caret 6.0_94 r42h57805ef_1 conda-forge
r-catools 1.18.2 r42ha503ecb_2 conda-forge
r-cellranger 1.1.0 r42hc72bb7e_1006 conda-forge
r-checkmate 2.2.0 r42h57805ef_1 conda-forge
r-class 7.3_22 r42h57805ef_1 conda-forge
r-cli 3.6.1 r42ha503ecb_1 conda-forge
r-cliapp 0.1.1 r42hc72bb7e_2 conda-forge
r-clipr 0.8.0 r42hc72bb7e_2 conda-forge
r-clock 0.7.0 r42ha503ecb_1 conda-forge
r-cluster 2.1.4 r42h61816a4_1 conda-forge
r-coda 0.19_4 r42hc72bb7e_2 conda-forge
r-codetools 0.2_19 r42hc72bb7e_1 conda-forge
r-colorspace 2.1_0 r42h57805ef_1 conda-forge
r-combinat 0.0_8 r42hc72bb7e_1005 conda-forge
r-commonmark 1.9.0 r42h57805ef_1 conda-forge
r-conflicted 1.2.0 r42h785f33e_1 conda-forge
r-conquer 1.3.3 r42h08d816e_2 conda-forge
r-corpcor 1.6.10 r42hc72bb7e_2 conda-forge
r-corrplot 0.92 r42hc72bb7e_2 conda-forge
r-cowplot 1.1.1 r42hc72bb7e_2 conda-forge
r-cpp11 0.4.6 r42hc72bb7e_0 conda-forge
r-crayon 1.5.2 r42hc72bb7e_2 conda-forge
r-crosstalk 1.2.0 r42hc72bb7e_2 conda-forge
r-curl 4.3.3 r42h06615bd_1 conda-forge
r-data.table 1.14.8 r42h029312a_2 conda-forge
r-data.tree 1.0.0 r42hd8ed1ab_2 conda-forge
r-datawizard 0.8.0 r42hc72bb7e_0 conda-forge
r-dbi 1.1.3 r42hc72bb7e_2 conda-forge
r-dbplyr 2.3.3 r42hc72bb7e_0 conda-forge
r-ddrtree 0.1.5 r42h59595ed_1006 conda-forge
r-deldir 1.0_9 r42h61816a4_1 conda-forge
r-densityclust 0.3.2 r42ha503ecb_2 conda-forge
r-deoptimr 1.1_2 r42hc72bb7e_0 conda-forge
r-desc 1.4.2 r42hc72bb7e_2 conda-forge
r-diagram 1.6.5 r42ha770c72_2 conda-forge
r-diagrammer 1.0.10 r42hc72bb7e_1 conda-forge
r-diagrammersvg 0.1 r42hc72bb7e_2 conda-forge
r-diffobj 0.3.5 r42h57805ef_2 conda-forge
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r-distributional 0.3.2 r42hc72bb7e_1 conda-forge
r-docopt 0.7.1 r42hc72bb7e_3 conda-forge
r-doparallel 1.0.17 r42hc72bb7e_2 conda-forge
r-downloader 0.4 r42hc72bb7e_1005 conda-forge
r-dplyr 1.1.2 r42ha503ecb_1 conda-forge
r-dqrng 0.3.0 r42ha503ecb_2 conda-forge
r-dt 0.28 r42hc72bb7e_1 conda-forge
r-dtplyr 1.3.1 r42hc72bb7e_1 conda-forge
r-e1071 1.7_13 r42ha503ecb_1 conda-forge
r-ellipsis 0.3.2 r42h57805ef_2 conda-forge
r-emmeans 1.8.8 r42hc72bb7e_0 conda-forge
r-envstats 2.8.0 r42ha770c72_0 conda-forge
r-estimability 1.4.1 r42hc72bb7e_2 conda-forge
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r-fansi 1.0.4 r42h57805ef_1 conda-forge
r-farver 2.1.1 r42ha503ecb_2 conda-forge
r-fastdummies 1.7.3 r42hc72bb7e_0 conda-forge
r-fastica 1.2_3 r42h316c678_2 conda-forge
r-fastmap 1.1.1 r42ha503ecb_1 conda-forge
r-fastmatch 1.1_4 r42h57805ef_0 conda-forge
r-fdrtool 1.2.17 r42h57805ef_2 conda-forge
r-ff 4.0.9 r42h59595ed_1 conda-forge
r-filelock 1.0.2 r42h57805ef_1004 conda-forge
r-fitdistrplus 1.1_11 r42hc72bb7e_1 conda-forge
r-flock 0.7 r42ha503ecb_1005 conda-forge
r-fnn 1.1.3.2 r42ha503ecb_1 conda-forge
r-fontawesome 0.5.2 r42hc72bb7e_0 conda-forge
r-forcats 1.0.0 r42hc72bb7e_1 conda-forge
r-foreach 1.5.2 r42hc72bb7e_2 conda-forge
r-foreign 0.8_84 r42h57805ef_1 conda-forge
r-formatr 1.14 r42hc72bb7e_1 conda-forge
r-formula 1.2_5 r42hc72bb7e_1 conda-forge
r-fs 1.6.3 r42ha503ecb_0 conda-forge
r-futile.logger 1.4.3 r42hc72bb7e_1005 conda-forge
r-futile.options 1.0.1 r42hc72bb7e_1004 conda-forge
r-future 1.33.0 r42hc72bb7e_0 conda-forge
r-future.apply 1.11.0 r42hc72bb7e_1 conda-forge
r-gamm4 0.2_6 r42hc72bb7e_3 conda-forge
r-gargle 1.5.2 r42h785f33e_0 conda-forge
r-gbrd 0.4_11 r42hc72bb7e_1005 conda-forge
r-gdata 2.19.0 r42hc72bb7e_1 conda-forge
r-geepack 1.3.9 r42h59595ed_1 conda-forge
r-generics 0.1.3 r42hc72bb7e_2 conda-forge
r-ggally 2.1.2 r42hc72bb7e_2 conda-forge
r-ggbeeswarm 0.7.2 r42hc72bb7e_1 conda-forge
r-ggdist 3.3.0 r42hc72bb7e_1 conda-forge
r-ggplot2 3.4.3 r42hc72bb7e_0 conda-forge
r-ggpubr 0.6.0 r42hc72bb7e_1 conda-forge
r-ggrepel 0.9.3 r42ha503ecb_1 conda-forge
r-ggridges 0.5.4 r42hc72bb7e_2 conda-forge
r-ggsci 3.0.0 r42hc72bb7e_1 conda-forge
r-ggsignif 0.6.4 r42hc72bb7e_1 conda-forge
r-glasso 1.11 r42h61816a4_4 conda-forge
r-glmmtmb 1.1.7 r42ha503ecb_1 conda-forge
r-globals 0.16.2 r42hc72bb7e_1 conda-forge
r-glue 1.6.2 r42h57805ef_2 conda-forge
r-goftest 1.2_3 r42h57805ef_2 conda-forge
r-googledrive 2.1.1 r42hc72bb7e_1 conda-forge
r-googlesheets4 1.1.1 r42h785f33e_1 conda-forge
r-gower 1.0.1 r42h57805ef_1 conda-forge
r-gplots 3.1.3 r42hc72bb7e_2 conda-forge
r-gridbase 0.4_7 r42hc72bb7e_1005 conda-forge
r-gridextra 2.3 r42hc72bb7e_1005 conda-forge
r-gtable 0.3.4 r42hc72bb7e_0 conda-forge
r-gtools 3.9.4 r42h57805ef_1 conda-forge
r-hardhat 1.3.0 r42hc72bb7e_1 conda-forge
r-haven 2.5.3 r42ha503ecb_0 conda-forge
r-hdinterval 0.2.4 r42hc72bb7e_1 conda-forge
r-here 1.0.1 r42hc72bb7e_2 conda-forge
r-hexbin 1.28.3 r42h61816a4_1 conda-forge
r-highr 0.10 r42hc72bb7e_1 conda-forge
r-hmisc 5.1_0 r42h61816a4_1 conda-forge
r-hms 1.1.3 r42hc72bb7e_1 conda-forge
r-hotelling 1.0_8 r42hc72bb7e_1 conda-forge
r-htmltable 2.4.1 r42hc72bb7e_2 conda-forge
r-htmltools 0.5.6 r42ha503ecb_0 conda-forge
r-htmlwidgets 1.6.2 r42hc72bb7e_1 conda-forge
r-httpuv 1.6.11 r42ha503ecb_1 conda-forge
r-httr 1.4.7 r42hc72bb7e_0 conda-forge
r-huge 1.3.5 r42ha503ecb_2 conda-forge
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r-jquerylib 0.1.4 r42hc72bb7e_2 conda-forge
r-jsonlite 1.8.7 r42h57805ef_0 conda-forge
r-jtools 2.2.2 r42hc72bb7e_0 conda-forge
r-kernsmooth 2.23_22 r42h13b3f57_0 conda-forge
r-knitr 1.43 r42hc72bb7e_1 conda-forge
r-kutils 1.73 r42hc72bb7e_0 conda-forge
r-labeling 0.4.3 r42hc72bb7e_0 conda-forge
r-lambda.r 1.2.4 r42hc72bb7e_3 conda-forge
r-later 1.3.1 r42ha503ecb_1 conda-forge
r-latexpdf 0.1.7 r42h142f84f_0
r-lattice 0.21_8 r42h57805ef_1 conda-forge
r-latticeextra 0.6_30 r42hc72bb7e_2 conda-forge
r-lava 1.7.2.1 r42hc72bb7e_1 conda-forge
r-lavaan 0.6_16 r42hc72bb7e_0 conda-forge
r-lazyeval 0.2.2 r42h57805ef_4 conda-forge
r-leiden 0.4.3 r42hc72bb7e_2 conda-forge
r-leidenbase 0.1.12 r42h6efe872_0 bioconda
r-lifecycle 1.0.3 r42hc72bb7e_2 conda-forge
r-lisreltor 0.1.5 r42hc72bb7e_2 conda-forge
r-listenv 0.9.0 r42hc72bb7e_1 conda-forge
r-lme4 1.1_34 r42ha503ecb_0 conda-forge
r-lmertest 3.1_3 r42hc72bb7e_2 conda-forge
r-lmtest 0.9_40 r42h61816a4_2 conda-forge
r-locfit 1.5_9.8 r42h57805ef_1 conda-forge
r-lpsolve 5.6.18 r42h57805ef_1 conda-forge
r-lsei 1.3_0 r42hd8f1df9_3 conda-forge
r-lubridate 1.9.2 r42h57805ef_2 conda-forge
r-magrittr 2.0.3 r42h57805ef_2 conda-forge
r-manipulatewidget 0.11.1 r42hc72bb7e_2 conda-forge
r-maptools 1.1_8 r42h57805ef_0 conda-forge
r-mass 7.3_60 r42h57805ef_1 conda-forge
r-matrix 1.6_1 r42h316c678_0 conda-forge
r-matrixcalc 1.0_6 r42hc72bb7e_2 conda-forge
r-matrixmodels 0.5_2 r42hc72bb7e_0 conda-forge
r-matrixstats 1.0.0 r42h57805ef_1 conda-forge
r-mclust 6.0.0 r42hd9ac46e_1 conda-forge
r-memoise 2.0.1 r42hc72bb7e_2 conda-forge
r-mgcv 1.9_0 r42h316c678_0 conda-forge
r-mi 1.1 r42hc72bb7e_2 conda-forge
r-mime 0.12 r42h57805ef_2 conda-forge
r-miniui 0.1.1.1 r42hc72bb7e_1004 conda-forge
r-minqa 1.2.5 r42hcf54a89_1 conda-forge
r-mnormt 2.1.1 r42h61816a4_1 conda-forge
r-modelmetrics 1.2.2.2 r42ha503ecb_3 conda-forge
r-modelr 0.1.11 r42hc72bb7e_1 conda-forge
r-munsell 0.5.0 r42hc72bb7e_1006 conda-forge
r-mvnfast 0.2.8 r42h08d816e_1 conda-forge
r-mvtnorm 1.2_3 r42hd9ac46e_0 conda-forge
r-nlme 3.1_163 r42h61816a4_0 conda-forge
r-nloptr 2.0.3 r42hcf54a89_2 conda-forge
r-nnet 7.3_19 r42h57805ef_1 conda-forge
r-nortest 1.0_4 r42hc72bb7e_1005 conda-forge
r-npsurv 0.5_0 r42hc72bb7e_2 conda-forge
r-numderiv 2016.8_1.1 r42hc72bb7e_5 conda-forge
r-openmx 2.21.8 r42hcf54a89_1 conda-forge
r-openssl 2.1.1 r42hb353fa6_0 conda-forge
r-openxlsx 4.2.5.2 r42ha503ecb_1 conda-forge
r-pak 0.6.0 r42hc72bb7e_0 conda-forge
r-pander 0.6.5 r42ha503ecb_2 conda-forge
r-parallelly 1.36.0 r42hc72bb7e_1 conda-forge
r-patchwork 1.1.3 r42hc72bb7e_0 conda-forge
r-pbapply 1.7_2 r42hc72bb7e_0 conda-forge
r-pbivnorm 0.6.0 r42h61816a4_1008 conda-forge
r-pbkrtest 0.5.2 r42hc72bb7e_1 conda-forge
r-performance 0.10.4 r42hc72bb7e_1 conda-forge
r-pheatmap 1.0.12 r42hc72bb7e_4 conda-forge
r-pillar 1.9.0 r42hc72bb7e_1 conda-forge
r-pkgbuild 1.4.2 r42hc72bb7e_0 conda-forge
r-pkgcache 2.2.0.1 r42hc72bb7e_0 conda-forge
r-pkgconfig 2.0.3 r42hc72bb7e_3 conda-forge
r-pkgdepends 0.6.0 r42hc72bb7e_0 conda-forge
r-pkgload 1.3.2.1 r42hc72bb7e_0 conda-forge
r-plogr 0.2.0 r42hc72bb7e_1005 conda-forge
r-plotly 4.10.2 r42hc72bb7e_1 conda-forge
r-plotrix 3.8_2 r42hc72bb7e_2 conda-forge
r-plyr 1.8.8 r42ha503ecb_1 conda-forge
r-png 0.1_8 r42h81d01c5_1 conda-forge
r-polyclip 1.10_4 r42ha503ecb_1 conda-forge
r-polynom 1.4_1 r42hc72bb7e_2 conda-forge
r-posterior 1.4.1 r42hc72bb7e_1 conda-forge
r-praise 1.0.0 r42hc72bb7e_1007 conda-forge
r-prettycode 1.1.0 r42hc72bb7e_3 conda-forge
r-prettyunits 1.1.1 r42hc72bb7e_3 conda-forge
r-proc 1.18.4 r42ha503ecb_0 conda-forge
r-processx 3.8.2 r42h57805ef_0 conda-forge
r-prodlim 2023.08.28 r42ha503ecb_0 conda-forge
r-progress 1.2.2 r42hc72bb7e_4 conda-forge
r-progressr 0.14.0 r42hc72bb7e_0 conda-forge
r-promises 1.2.1 r42ha503ecb_0 conda-forge
r-proxy 0.4_27 r42h57805ef_2 conda-forge
r-ps 1.7.5 r42h57805ef_1 conda-forge
r-psych 2.3.9 r42hc72bb7e_0 conda-forge
r-purrr 1.0.1 r42h57805ef_1 conda-forge
r-qgam 1.3.4 r42h57805ef_2 conda-forge
r-qgraph 1.9.5 r42ha503ecb_1 conda-forge
r-qlcmatrix 0.9.7 r42hc72bb7e_1004 conda-forge
r-quadprog 1.5_8 r42h13b3f57_5 conda-forge
r-quantreg 5.97 r42hd9ac46e_0 conda-forge
r-r.matlab 3.7.0 r42hc72bb7e_2 conda-forge
r-r.methodss3 1.8.2 r42hc72bb7e_2 conda-forge
r-r.oo 1.25.0 r42hc72bb7e_2 conda-forge
r-r.utils 2.12.2 r42hc72bb7e_1 conda-forge
r-r6 2.5.1 r42hc72bb7e_2 conda-forge
r-ragg 1.2.4 r42hc1f6985_0 conda-forge
r-rann 2.6.1 r42ha503ecb_4 conda-forge
r-rappdirs 0.3.3 r42h57805ef_2 conda-forge
r-rbibutils 2.2.15 r42h57805ef_0 conda-forge
r-rcolorbrewer 1.1_3 r42h785f33e_2 conda-forge
r-rcpp 1.0.11 r42h7df8631_0 conda-forge
r-rcppannoy 0.0.21 r42ha503ecb_0 conda-forge
r-rcpparmadillo 0.12.6.3.0 r42h08d816e_0 conda-forge
r-rcppeigen 0.3.3.9.3 r42h08d816e_1 conda-forge
r-rcppparallel 5.1.6 r42ha503ecb_1 conda-forge
r-rcppprogress 0.4.2 r42hc72bb7e_3 conda-forge
r-rcpproll 0.3.0 r42ha503ecb_1004 conda-forge
r-rcpptoml 0.2.2 r42ha503ecb_1 conda-forge
r-rcurl 1.98_1.9 r42h06615bd_1 conda-forge
r-rdpack 2.5 r42hc72bb7e_0 conda-forge
r-readr 2.1.4 r42ha503ecb_1 conda-forge
r-readxl 1.4.3 r42ha5c9fba_0 conda-forge
r-recipes 1.0.8 r42hc72bb7e_0 conda-forge
r-regsem 1.9.5 r42h9c1d1bc_1 conda-forge
r-rematch 2.0.0 r42hc72bb7e_0 conda-forge
r-rematch2 2.1.2 r42hc72bb7e_3 conda-forge
r-remotes 2.4.2.1 r42hc72bb7e_0 conda-forge
r-reprex 2.0.2 r42hc72bb7e_2 conda-forge
r-reshape 0.8.9 r42hc72bb7e_2 conda-forge
r-reshape2 1.4.4 r42ha503ecb_3 conda-forge
r-reticulate 1.31 r42ha503ecb_0 conda-forge
r-rgeos 0.6_4 r42hb58d41b_0 conda-forge
r-rgexf 0.16.2 r42hc72bb7e_2 conda-forge
r-rgl 1.2.1 r42h0a40d00_0 conda-forge
r-rhpcblasctl 0.23_42 r42h57805ef_1 conda-forge
r-rio 0.5.30 r42hc72bb7e_0 conda-forge
r-rjava 1.0_6 r42h57805ef_7 conda-forge
r-rjson 0.2.21 r42ha503ecb_3 conda-forge
r-rlang 1.1.1 r42ha503ecb_1 conda-forge
r-rmarkdown 2.24 r42hc72bb7e_0 conda-forge
r-rmio 0.4.0 r42hc72bb7e_2 conda-forge
r-rockchalk 1.8.157 r42hc72bb7e_2 conda-forge
r-rocr 1.0_11 r42hc72bb7e_3 conda-forge
r-rpart 4.1.19 r42h57805ef_1 conda-forge
r-rpf 1.0.14 r42ha503ecb_0 conda-forge
r-rprojroot 2.0.3 r42hc72bb7e_1 conda-forge
r-rsolnp 1.16 r42ha770c72_1005 conda-forge
r-rspectra 0.16_1 r42h08d816e_2 conda-forge
r-rsqlite 2.3.1 r42ha503ecb_1 conda-forge
r-rstatix 0.7.2 r42hc72bb7e_1 conda-forge
r-rstudioapi 0.15.0 r42hc72bb7e_0 conda-forge
r-rsvg 2.4.0 r42ha0f4192_0 conda-forge
r-rtsne 0.16 r42h7ce84a7_2 conda-forge
r-runit 0.4.32 r42hc72bb7e_1004 conda-forge
r-rvest 1.0.3 r42hc72bb7e_2 conda-forge
r-sandwich 3.0_2 r42hc72bb7e_2 conda-forge
r-sass 0.4.7 r42ha503ecb_0 conda-forge
r-scales 1.2.1 r42hc72bb7e_2 conda-forge
r-scattermore 1.2 r42ha503ecb_1 conda-forge
r-sctransform 0.3.5 r42h08d816e_2 conda-forge
r-selectr 0.4_2 r42hc72bb7e_3 conda-forge
r-sem 3.1_15 r42ha503ecb_2 conda-forge
r-semplot 1.1.6 r42hc72bb7e_2 conda-forge
r-servr 0.27 r42hc72bb7e_1 conda-forge
r-seurat 4.3.0.1 r42ha503ecb_0 conda-forge
r-seuratobject 4.1.3 r42ha503ecb_1 conda-forge
r-shape 1.4.6 r42ha770c72_2 conda-forge
r-shiny 1.7.5 r42h785f33e_0 conda-forge
r-shinyjs 2.1.0 r42hc72bb7e_2 conda-forge
r-signac 1.10.0 r42h21a89ab_1 bioconda
r-sitmo 2.0.2 r42ha503ecb_2 conda-forge
r-slam 0.1_50 r42h1df0287_3 conda-forge
r-snow 0.4_4 r42hc72bb7e_2 conda-forge
r-sourcetools 0.1.7_1 r42ha503ecb_1 conda-forge
r-sp 2.0_0 r42h57805ef_0 conda-forge
r-sparsem 1.81 r42h61816a4_2 conda-forge
r-sparsesvd 0.2_2 r42h57805ef_1 conda-forge
r-spatstat.data 3.0_1 r42hc72bb7e_1 conda-forge
r-spatstat.explore 3.2_1 r42h57805ef_1 conda-forge
r-spatstat.geom 3.2_4 r42h57805ef_0 conda-forge
r-spatstat.random 3.1_5 r42ha503ecb_1 conda-forge
r-spatstat.sparse 3.0_2 r42h57805ef_0 conda-forge
r-spatstat.utils 3.0_3 r42h57805ef_1 conda-forge
r-speedglm 0.3_5 r42hc72bb7e_1 conda-forge
r-squarem 2021.1 r42hc72bb7e_2 conda-forge
r-stanheaders 2.26.28 r42hcf54a89_0 conda-forge
r-statmod 1.5.0 r42hd8f1df9_1 conda-forge
r-stringi 1.7.6 r42h884c59f_0
r-stringr 1.5.0 r42h785f33e_1 conda-forge
r-suppdists 1.1_9.7 r42ha503ecb_2 conda-forge
r-survival 3.5_7 r42h57805ef_0 conda-forge
r-svglite 2.1.1 r42h329214f_1 conda-forge
r-svunit 1.0.6 r42hc72bb7e_2 conda-forge
r-sys 3.4.2 r42h57805ef_1 conda-forge
r-systemfonts 1.0.4 r42haf97adc_2 conda-forge
r-tensor 1.5 r42hc72bb7e_1005 conda-forge
r-tensora 0.36.2 r42h57805ef_2 conda-forge
r-testthat 3.1.10 r42ha503ecb_0 conda-forge
r-textshaping 0.3.6 r42h884c59f_0
r-tibble 3.2.1 r42h57805ef_2 conda-forge
r-tidybayes 3.0.6 r42hc72bb7e_0 conda-forge
r-tidyr 1.3.0 r42ha503ecb_1 conda-forge
r-tidyselect 1.2.0 r42hc72bb7e_1 conda-forge
r-tidyverse 1.3.2 r42hc72bb7e_1 conda-forge
r-timechange 0.2.0 r42ha503ecb_1 conda-forge
r-timedate 4022.108 r42hc72bb7e_1 conda-forge
r-tinytex 0.46 r42hc72bb7e_0 conda-forge
r-tmb 1.9.6 r42h08d816e_0 conda-forge
r-tmvnsim 1.0_2 r42h61816a4_5 conda-forge
r-truncnorm 1.0_9 r42h57805ef_1 conda-forge
r-tzdb 0.4.0 r42ha503ecb_1 conda-forge
r-utf8 1.2.3 r42h57805ef_1 conda-forge
r-uuid 1.1_1 r42h57805ef_0 conda-forge
r-uwot 0.1.16 r42ha503ecb_0 conda-forge
r-v8 4.3.0 r42h3877ea8_0 conda-forge
r-vctrs 0.6.3 r42ha503ecb_0 conda-forge
r-vgam 1.1_8 r42h61816a4_1 conda-forge
r-vipor 0.4.5 r42hc72bb7e_1005 conda-forge
r-viridis 0.6.4 r42hc72bb7e_0 conda-forge
r-viridislite 0.4.2 r42hc72bb7e_1 conda-forge
r-visnetwork 2.1.2 r42hc72bb7e_2 conda-forge
r-vroom 1.6.3 r42ha503ecb_1 conda-forge
r-waldo 0.5.1 r42hc72bb7e_1 conda-forge
r-webshot 0.5.5 r42hc72bb7e_0 conda-forge
r-withr 2.5.0 r42hc72bb7e_2 conda-forge
r-xfun 0.40 r42ha503ecb_0 conda-forge
r-xlsx 0.6.5 r42hc72bb7e_2 conda-forge
r-xlsxjars 0.6.1 r42hc72bb7e_5 conda-forge
r-xml 3.99_0.11 r42h2b86b34_2 conda-forge
r-xml2 1.3.3 r42h044e5c7_2 conda-forge
r-xtable 1.8_4 r42hc72bb7e_5 conda-forge
r-yaml 2.3.7 r42h57805ef_1 conda-forge
r-zip 2.3.0 r42h57805ef_1 conda-forge
r-zoo 1.8_12 r42h57805ef_1 conda-forge
radian 0.6.7 pyhd8ed1ab_0 conda-forge
rchitect 0.4.2 py311h459d7ec_0 conda-forge
readline 8.2 h8228510_1 conda-forge
sed 4.8 he412f7d_0 conda-forge
setuptools 68.1.2 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sqlite 3.43.0 h2c6b66d_0 conda-forge
suitesparse 5.10.1 he2db622_2
sysroot_linux-64 2.28 he073ed8_0 conda-forge
tbb 2021.7.0 h924138e_1 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomlkit 0.12.1 pyha770c72_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
wheel 0.41.2 pyhd8ed1ab_0 conda-forge
xmltodict 0.13.0 pyhd8ed1ab_0 conda-forge
xorg-fixesproto 5.0 h7f98852_1002 conda-forge
xorg-inputproto 2.3.2 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxau 1.0.11 hd590300_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h0b41bf4_2 conda-forge
xorg-libxfixes 5.0.3 h7f98852_1004 conda-forge
xorg-libxi 1.7.10 h7f98852_0 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-libxt 1.2.1 h7f98852_2 conda-forge
xorg-libxtst 1.2.3 h7f98852_1002 conda-forge
xorg-recordproto 1.14.2 h7f98852_1002 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h0b41bf4_1003 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.4.2 h5eee18b_0
yaml 0.2.5 h7f98852_2 conda-forge
yq 3.2.2 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
zstd 1.5.5 hfc55251_0 conda-forgeEnvironment info
mamba version : 1.4.9
active environment : /opt/quarantine/software/R/4.2.0/r-base
active env location : /opt/quarantine/software/R/4.2.0/r-base
shell level : 2
user config file : /home/cic/devgab/.condarc
populated config files : /home/cic/devgab/.condarc
/opt/quarantine/software/R/4.2.0/r-base/.condarc
conda version : 23.3.1
conda-build version : 3.24.0
python version : 3.10.12.final.0
virtual packages : __archspec=1=x86_64
__cuda=12.2=0
__glibc=2.35=0
__linux=6.5.7=0
__unix=0=0
base environment : /opt/quarantine/software/anaconda/2023.03-1/install (writable)
conda av data dir : /opt/quarantine/software/anaconda/2023.03-1/install/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /opt/quarantine/software/anaconda/2023.03-1/install/pkgs
/home/cic/devgab/.conda/pkgs
envs directories : /opt/quarantine/software/anaconda/2023.03-1/install/envs
/home/cic/devgab/.conda/envs
platform : linux-64
user-agent : conda/23.3.1 requests/2.28.1 CPython/3.10.12 Linux/6.5.7-x64v3-xanmod1 ubuntu/22.04.3 glibc/2.35
UID:GID : 1111:1001
netrc file : None
offline mode : FalseICU version mismatch
I have the following packages installed:
r-base=3.4.1=0
r-stringr=1.2.0=r3.4.1_0
icu=54.1
There are many more packages, but the important point is that some of them apparently depend on ICU 54, not 58. Then when I do load the stringi library in R I get:
> library(stringi)
Error: package or namespace load failed for 'stringi' in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/data/kensche/work/share/miniconda3/envs/test/lib/R/library/stringi/libs/stringi.so':
libicui18n.so.58: cannot open shared object file: No such file or directory
- Should ICU not be a runtime dependency of r-stringi to ensure such problems do not occur?
- Is it possible to get a version linked against ICU 54.0, which is the version that the set of tools that I need currently supports?
I'd be grateful for your help!
r-stringi icu R 3.6.1 OSX
I have the following error (full log https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=80321&view=logs)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '$PREFIX/lib/R/library/stringi/libs/stringi.dylib':
dlopen($PREFIX/lib/R/library/stringi/libs/stringi.dylib, 6): Library not loaded: @rpath/libicui18n.64.dylib
Referenced from: $PREFIX/lib/R/library/stringi/libs/s
stringi.so Is missing on conda enviroments
Hello there!
I am having some issues with stringi when I try to get it run from a conda envirioment. This is the error I am currently getting:
processing file: final_filters2.Rmd
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/lustre/scratch117/cellgen/team218/gp7/miniconda/lib/R/library/stringi/libs/stringi.so':
libicui18n.so.58: cannot open shared object file: No such file or directory
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
In addition: Warning messages:
1: In grDevices::png(tempfile()) :
unable to load shared object '/lustre/scratch117/cellgen/team218/gp7/miniconda/lib/R/library/grDevices/libs//cairo.so':
libicui18n.so.58: cannot open shared object file: No such file or directory
2: In grDevices::png(tempfile()) : failed to load cairo DLL
Execution halted
It seems that other people have had this issue before and it might have to do with the compiler call:
https://stackoverflow.com/questions/46735932/rstudio-how-to-get-stringi-package-installation-to-work-all-good-until-dyn-load
I would be very grateful if you can give me any ideas about how to solve this, as I would like to keep using this R-script (final_filters2.Rmd) string within a conda enviroment that run though SnakeMake.
Best,
Guillermo
Environment (
conda list):
channels:
- conda-forge
- bioconda
- biobuilds
dependencies:
- r-ggplot2
- r-reshape2
- r-stringr
- r-mixtools
- r-data.table
- r-stringi
- pandoc
Details about
conda and system ( conda info ):
active environment : MicroExonator_R
active env location : /lustre/scratch117/cellgen/team218/gp7/miniconda/envs/MicroExonator_R
shell level : 2
user config file : /nfs/users/nfs_g/gp7/.condarc
populated config files : /nfs/users/nfs_g/gp7/.condarc
conda version : 4.6.7
conda-build version : not installed
python version : 2.7.12.final.0
base environment : /lustre/scratch117/cellgen/team218/gp7/miniconda (writable)
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/linux-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://conda.anaconda.org/cgat/linux-64
https://conda.anaconda.org/cgat/noarch
package cache : /lustre/scratch117/cellgen/team218/gp7/miniconda/pkgs
/nfs/users/nfs_g/gp7/.conda/pkgs
envs directories : /lustre/scratch117/cellgen/team218/gp7/miniconda/envs
/nfs/users/nfs_g/gp7/.conda/envs
platform : linux-64
user-agent : conda/4.6.7 requests/2.21.0 CPython/2.7.12 Linux/3.2.0-105-generic ubuntu/12.04.5 glibc/2.15
UID:GID : 15375:1535
netrc file : None
offline mode : False
stringi.so linked to both 58 and 64 versions of libicui18n.so
Issue:
I'm running into a strange linking issue on Linux. The stringi.so library seems to be linked to two versions of libicui18n.
$ ldd stringi.so | grep icu
libicui18n.so.64 => not found
libicuuc.so.64 => not found
libicuuc.so.58 => $HOME/miniconda3/envs/$ENV/lib/R/library/stringi/libs/../../../lib/../../libicuuc.so.58 (0x00007f2310247000)
libicui18n.so.58 => $HOME/miniconda3/envs/$ENV/lib/R/library/stringi/libs/../../../lib/../../libicui18n.so.58 (0x00007f230ffc8000)
libicudata.so.58 => $HOME/miniconda3/envs/$ENV/lib/R/library/stringi/libs/../../../lib/../.././libicudata.so.58 (0x00007f230e559000)
Environment (
conda list):
$ conda list | grep -ie icu -e r-base -e r-stringi
icu 58.2 hf484d3e_1000 conda-forge
r-base 3.6.1 h8900bf8_2 conda-forge
r-base64enc 0.1_3 r36hcdcec82_1003 conda-forge
r-stringi 1.4.3 r36h0357c0b_2 conda-forge
Details about
conda and system ( conda info ):
$ conda info
active environment : $ENV
active env location : $HOME/miniconda3/envs/$ENV
shell level : 1
user config file : $HOME/.condarc
populated config files : $HOME/.condarc
conda version : 4.8.2
conda-build version : not installed
python version : 3.7.6.final.0
virtual packages : __glibc=2.27
base environment : $HOME/miniconda3 (writable)
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : $HOME/miniconda3/pkgs
$HOME/.conda/pkgs
envs directories : $HOME/miniconda3/envs
$HOME/.conda/envs
platform : linux-64
user-agent : conda/4.8.2 requests/2.22.0 CPython/3.7.6 Linux/4.14.88-88.76.amzn2.x86_64 ubuntu/18.04.3 glibc/2.27
UID:GID : 1002:1002
netrc file : None
offline mode : False
libicui18n.so.64 and stringi
Issue:
> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv/lib/R/library/stringi/libs/stringi.so':
libicui18n.so.64: cannot open shared object file: No such file or directoryEnvironment (
conda list):
$ conda list | grep -E "stringi|tidyverse|stringr|icu"
icu 58.2 hf484d3e_1000 conda-forge
r-reticulate 1.13 r36h0357c0b_0 conda-forge
r-stringi 1.4.3 r36h0357c0b_2 conda-forge
r-stringr 1.4.0 r36h6115d3f_1 conda-forge
r-tidyverse 1.3.0 r36h6115d3f_0 conda-forgeDetails about
conda and system ( conda info ):
$ conda info
active environment : base
active env location : /ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv
shell level : 1
user config file : /home/zhujie/.condarc
populated config files : /home/zhujie/.condarc
conda version : 4.8.0
conda-build version : 3.18.11
python version : 3.6.7.final.0
virtual packages : __glibc=2.17
base environment : /ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv (writable)
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://conda.anaconda.org/pytorch/linux-64
https://conda.anaconda.org/pytorch/noarch
https://conda.anaconda.org/knights-lab/linux-64
https://conda.anaconda.org/knights-lab/noarch
https://conda.anaconda.org/alienzj/linux-64
https://conda.anaconda.org/alienzj/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /ldfssz1/ST_META/share/User/zhujie/.conda/pkgs
envs directories : /ldfssz1/ST_META/share/User/zhujie/.conda/envs
/ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv/envs
/home/zhujie/.conda/envs
platform : linux-64
user-agent : conda/4.8.0 requests/2.22.0 CPython/3.6.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17
UID:GID : 666715:2782
netrc file : None
offline mode : False
libicui18n.so.64 missing in bioconda build
Solution to issue cannot be found in the documentation.
- I checked the documentation.
Issue
I'm experiencing problems with r-stringi during a bioconda build (bioconda/bioconda-recipes#44971)
19:55:07 BIOCONDA INFO (OUT) > library('reshape2')
19:55:07 BIOCONDA INFO (OUT) Error: package or namespace load failed for ‘reshape2’ in dyn.load(file, DLLpath = DLLpath, ...):
19:55:07 BIOCONDA INFO (OUT) unable to load shared object '/opt/conda/conda-bld/mitos_1704656792237/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/stringi/libs/stringi.so':
19:55:07 BIOCONDA INFO (OUT) libicui18n.so.64: cannot open shared object file: No such file or directory
19:55:07 BIOCONDA INFO (OUT) In addition: Warning message:
19:55:07 BIOCONDA INFO (OUT) package ‘reshape2’ was built under R version 3.6.3
Any ideas how to fix this?
R version seems a bit old, but I have not managed to get a newer one: If I require R >3 then I get
20:30:42 BIOCONDA INFO (OUT) The reported errors are:
20:30:42 BIOCONDA INFO (OUT) - Encountered problems while solving:
20:30:42 BIOCONDA INFO (OUT) - - package r-base-4.0.3-h349a78a_8 requires icu >=68.1,<69.0a0, but none of the providers can be installed
Installed packages
See linked PREnvironment info
Can't access this in the PRr-stringi icu 58.* version mismatch seem to be back with conda-forge R 3.5.1 on Linux
Latest conda-forge r-stringi fails to load with libicui18n.so.58: cannot open shared object file: No such file or directory error.
I believe only a few days ago it was working and I did a conda update --all some time and then it broke.
> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/hermidalc/soft/miniconda3/lib/R/library/stringi/libs/stringi.so':
libicui18n.so.58: cannot open shared object file: No such file or directorySteps to reproduce on a fresh Miniconda3 install:
conda config --add channels conda-forge
conda update --all
conda install r-base=3.5.1 r-stringi
R
> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/hermidalc/soft/miniconda3/lib/R/library/stringi/libs/stringi.so':
libicui18n.so.58: cannot open shared object file: No such file or directoryEnvironment (
conda list):
$ conda list
# packages in environment at /home/hermidalc/soft/miniconda3:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
_r-mutex 1.0.1 anacondar_1 conda-forge
asn1crypto 0.24.0 py37_1003 conda-forge
binutils_impl_linux-64 2.31.1 h6176602_1
binutils_linux-64 2.31.1 h6176602_7
bwidget 1.9.11 0 conda-forge
bzip2 1.0.8 h516909a_0 conda-forge
ca-certificates 2019.6.16 hecc5488_0 conda-forge
cairo 1.16.0 hfb77d84_1002 conda-forge
certifi 2019.6.16 py37_1 conda-forge
cffi 1.12.3 py37h8022711_0 conda-forge
chardet 3.0.4 py37_1003 conda-forge
conda 4.7.10 py37_0 conda-forge
conda-package-handling 1.3.11 py37_0 conda-forge
cryptography 2.7 py37h72c5cf5_0 conda-forge
curl 7.65.3 hf8cf82a_0 conda-forge
fontconfig 2.13.1 h86ecdb6_1001 conda-forge
freetype 2.10.0 he983fc9_0 conda-forge
fribidi 1.0.5 h516909a_1002 conda-forge
gcc_impl_linux-64 7.3.0 habb00fd_1 conda-forge
gcc_linux-64 7.3.0 h553295d_7 conda-forge
gettext 0.19.8.1 hc5be6a0_1002 conda-forge
gfortran_impl_linux-64 7.3.0 hdf63c60_1
gfortran_linux-64 7.3.0 h553295d_7
glib 2.58.3 h6f030ca_1002 conda-forge
graphite2 1.3.13 hf484d3e_1000 conda-forge
gsl 2.5 h294904e_0 conda-forge
gxx_impl_linux-64 7.3.0 hdf63c60_1 conda-forge
gxx_linux-64 7.3.0 h553295d_7 conda-forge
harfbuzz 2.4.0 h9f30f68_2 conda-forge
icu 64.2 he1b5a44_0 conda-forge
idna 2.8 py37_1000 conda-forge
jpeg 9c h14c3975_1001 conda-forge
krb5 1.16.3 h05b26f9_1001 conda-forge
libarchive 3.3.3 hb44662c_1005 conda-forge
libblas 3.8.0 10_openblas conda-forge
libcblas 3.8.0 10_openblas conda-forge
libcurl 7.65.3 hda55be3_0 conda-forge
libedit 3.1.20170329 hf8c457e_1001 conda-forge
libffi 3.2.1 he1b5a44_1006 conda-forge
libgcc-ng 9.1.0 hdf63c60_0
libgfortran-ng 7.3.0 hdf63c60_0
libiconv 1.15 h516909a_1005 conda-forge
libopenblas 0.3.6 h6e990d7_5 conda-forge
libpng 1.6.37 hed695b0_0 conda-forge
libssh2 1.8.2 h22169c7_2 conda-forge
libstdcxx-ng 9.1.0 hdf63c60_0
libtiff 4.0.10 h57b8799_1003 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.13 h14c3975_1002 conda-forge
libxml2 2.9.9 hee79883_2 conda-forge
lz4-c 1.8.3 he1b5a44_1001 conda-forge
lzo 2.10 h14c3975_1000 conda-forge
make 4.2.1 h14c3975_2004 conda-forge
ncurses 6.1 hf484d3e_1002 conda-forge
openblas 0.3.6 h6e990d7_5 conda-forge
openssl 1.1.1c h516909a_0 conda-forge
pango 1.42.4 he7ab937_0 conda-forge
pcre 8.41 hf484d3e_1003 conda-forge
pip 19.2.1 py37_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
pthread-stubs 0.4 h14c3975_1001 conda-forge
pycosat 0.6.3 py37h14c3975_1001 conda-forge
pycparser 2.19 py37_1 conda-forge
pyopenssl 19.0.0 py37_0 conda-forge
pysocks 1.7.0 py37_0 conda-forge
python 3.7.3 h33d41f4_1 conda-forge
python-libarchive-c 2.8 py37_1004 conda-forge
r-base 3.5.1 hfb2a302_1009 conda-forge
r-stringi 1.4.3 r35h0357c0b_2 conda-forge
readline 8.0 hf8c457e_0 conda-forge
requests 2.22.0 py37_1 conda-forge
ruamel_yaml 0.15.71 py37h14c3975_1000 conda-forge
setuptools 41.0.1 py37_0 conda-forge
six 1.12.0 py37_1000 conda-forge
sqlite 3.29.0 hcee41ef_0 conda-forge
tk 8.6.9 hed695b0_1002 conda-forge
tktable 2.10 h555a92e_1 conda-forge
tqdm 4.32.2 py_0 conda-forge
urllib3 1.25.3 py37_0 conda-forge
wheel 0.33.4 py37_0 conda-forge
xorg-kbproto 1.0.7 h14c3975_1002 conda-forge
xorg-libice 1.0.10 h516909a_0 conda-forge
xorg-libsm 1.2.3 h84519dc_1000 conda-forge
xorg-libx11 1.6.8 h516909a_0 conda-forge
xorg-libxau 1.0.9 h14c3975_0 conda-forge
xorg-libxdmcp 1.1.3 h516909a_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h14c3975_1002 conda-forge
xorg-xextproto 7.3.0 h14c3975_1002 conda-forge
xorg-xproto 7.0.31 h14c3975_1007 conda-forge
xz 5.2.4 h14c3975_1001 conda-forge
yaml 0.1.7 h14c3975_1001 conda-forge
zlib 1.2.11 h516909a_1005 conda-forge
zstd 1.4.0 h3b9ef0a_0 conda-forge
Details about
conda and system ( conda info ):
$ conda info
active environment : base
active env location : /home/hermidalc/soft/miniconda3
shell level : 1
user config file : /home/hermidalc/.condarc
populated config files : /home/hermidalc/.condarc
conda version : 4.7.10
conda-build version : not installed
python version : 3.7.3.final.0
virtual packages :
base environment : /home/hermidalc/soft/miniconda3 (writable)
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/hermidalc/soft/miniconda3/pkgs
/home/hermidalc/.conda/pkgs
envs directories : /home/hermidalc/soft/miniconda3/envs
/home/hermidalc/.conda/envs
platform : linux-64
user-agent : conda/4.7.10 requests/2.22.0 CPython/3.7.3 Linux/5.1.18-300.fc30.x86_64 fedora/30 glibc/2.29
UID:GID : 1000:1000
netrc file : None
offline mode : False
Try to rerender
@conda-forge-admin please rerender
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