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r-stringi-feedstock's Introduction

About r-stringi-feedstock

Feedstock license: BSD-3-Clause

Home: http://www.gagolewski.com/software/stringi/ http://site.icu-project.org/ http://www.unicode.org/

Package license: FOSS

Summary: Fast, correct, consistent, portable, as well as convenient character string/text processing in every locale and any native encoding. Owing to the use of the 'ICU' (International Components for Unicode) library, the package provides 'R' users with platform-independent functions known to 'Java', 'Perl', 'Python', 'PHP', and 'Ruby' programmers. Available features include: pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, Unicode normalization, date-time formatting and parsing, and many more.

Current build status

Azure
VariantStatus
linux_64_r_base4.2 variant
linux_64_r_base4.3 variant
linux_aarch64_r_base4.2 variant
linux_aarch64_r_base4.3 variant
linux_ppc64le_r_base4.2 variant
linux_ppc64le_r_base4.3 variant
osx_64_r_base4.2 variant
osx_64_r_base4.3 variant
osx_arm64_r_base4.2 variant
osx_arm64_r_base4.3 variant
win_64 variant

Current release info

Name Downloads Version Platforms
Conda Recipe Conda Downloads Conda Version Conda Platforms

Installing r-stringi

Installing r-stringi from the conda-forge channel can be achieved by adding conda-forge to your channels with:

conda config --add channels conda-forge
conda config --set channel_priority strict

Once the conda-forge channel has been enabled, r-stringi can be installed with conda:

conda install r-stringi

or with mamba:

mamba install r-stringi

It is possible to list all of the versions of r-stringi available on your platform with conda:

conda search r-stringi --channel conda-forge

or with mamba:

mamba search r-stringi --channel conda-forge

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search r-stringi --channel conda-forge

# List packages depending on `r-stringi`:
mamba repoquery whoneeds r-stringi --channel conda-forge

# List dependencies of `r-stringi`:
mamba repoquery depends r-stringi --channel conda-forge

About conda-forge

Powered by NumFOCUS

conda-forge is a community-led conda channel of installable packages. In order to provide high-quality builds, the process has been automated into the conda-forge GitHub organization. The conda-forge organization contains one repository for each of the installable packages. Such a repository is known as a feedstock.

A feedstock is made up of a conda recipe (the instructions on what and how to build the package) and the necessary configurations for automatic building using freely available continuous integration services. Thanks to the awesome service provided by Azure, GitHub, CircleCI, AppVeyor, Drone, and TravisCI it is possible to build and upload installable packages to the conda-forge anaconda.org channel for Linux, Windows and OSX respectively.

To manage the continuous integration and simplify feedstock maintenance conda-smithy has been developed. Using the conda-forge.yml within this repository, it is possible to re-render all of this feedstock's supporting files (e.g. the CI configuration files) with conda smithy rerender.

For more information please check the conda-forge documentation.

Terminology

feedstock - the conda recipe (raw material), supporting scripts and CI configuration.

conda-smithy - the tool which helps orchestrate the feedstock. Its primary use is in the construction of the CI .yml files and simplify the management of many feedstocks.

conda-forge - the place where the feedstock and smithy live and work to produce the finished article (built conda distributions)

Updating r-stringi-feedstock

If you would like to improve the r-stringi recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the conda-forge channel, whereupon the built conda packages will be available for everybody to install and use from the conda-forge channel. Note that all branches in the conda-forge/r-stringi-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

  • If the version of a package is not being increased, please add or increase the build/number.
  • If the version of a package is being increased, please remember to return the build/number back to 0.

Feedstock Maintainers

r-stringi-feedstock's People

Contributors

beckermr avatar bgruening avatar cbrueffer avatar conda-forge-admin avatar conda-forge-curator[bot] avatar dbast avatar dfornika avatar dpryan79 avatar github-actions[bot] avatar isuruf avatar mariusvniekerk avatar ocefpaf avatar regro-cf-autotick-bot avatar rjmw avatar xhochy avatar

Watchers

avatar avatar avatar avatar avatar avatar avatar

Forkers

ocefpaf conda-forge-admin lexual anacondarecipes mariusvniekerk regro-cf-autotick-bot dfornika rjmw conda-forge-linter

r-stringi-feedstock's Issues

libicui18n.so.64 missing in bioconda build

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

I'm experiencing problems with r-stringi during a bioconda build (bioconda/bioconda-recipes#44971)

19:55:07 BIOCONDA INFO (OUT) > library('reshape2')
19:55:07 BIOCONDA INFO (OUT) Error: package or namespace load failed for ‘reshape2’ in dyn.load(file, DLLpath = DLLpath, ...):
19:55:07 BIOCONDA INFO (OUT)  unable to load shared object '/opt/conda/conda-bld/mitos_1704656792237/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/R/library/stringi/libs/stringi.so':
19:55:07 BIOCONDA INFO (OUT)   libicui18n.so.64: cannot open shared object file: No such file or directory
19:55:07 BIOCONDA INFO (OUT) In addition: Warning message:
19:55:07 BIOCONDA INFO (OUT) package ‘reshape2’ was built under R version 3.6.3

Any ideas how to fix this?

R version seems a bit old, but I have not managed to get a newer one: If I require R >3 then I get

20:30:42 BIOCONDA INFO (OUT) The reported errors are:
20:30:42 BIOCONDA INFO (OUT) - Encountered problems while solving:
20:30:42 BIOCONDA INFO (OUT) -   - package r-base-4.0.3-h349a78a_8 requires icu >=68.1,<69.0a0, but none of the providers can be installed

Installed packages

See linked PR

Environment info

Can't access this in the PR

libicui18n.so.64 and stringi

Issue:

> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv/lib/R/library/stringi/libs/stringi.so':
  libicui18n.so.64: cannot open shared object file: No such file or directory

Environment (conda list): 
$ conda list | grep -E "stringi|tidyverse|stringr|icu"
icu                       58.2              hf484d3e_1000    conda-forge
r-reticulate              1.13              r36h0357c0b_0    conda-forge
r-stringi                 1.4.3             r36h0357c0b_2    conda-forge
r-stringr                 1.4.0             r36h6115d3f_1    conda-forge
r-tidyverse               1.3.0             r36h6115d3f_0    conda-forge

Details about conda and system ( conda info ): 
$ conda info
active environment : base
    active env location : /ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv
            shell level : 1
       user config file : /home/zhujie/.condarc
 populated config files : /home/zhujie/.condarc
          conda version : 4.8.0
    conda-build version : 3.18.11
         python version : 3.6.7.final.0
       virtual packages : __glibc=2.17
       base environment : /ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv  (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://conda.anaconda.org/pytorch/linux-64
                          https://conda.anaconda.org/pytorch/noarch
                          https://conda.anaconda.org/knights-lab/linux-64
                          https://conda.anaconda.org/knights-lab/noarch
                          https://conda.anaconda.org/alienzj/linux-64
                          https://conda.anaconda.org/alienzj/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /ldfssz1/ST_META/share/User/zhujie/.conda/pkgs
       envs directories : /ldfssz1/ST_META/share/User/zhujie/.conda/envs
                          /ldfssz1/ST_META/share/User/zhujie/.conda/envs/bioenv/envs
                          /home/zhujie/.conda/envs
               platform : linux-64
             user-agent : conda/4.8.0 requests/2.22.0 CPython/3.6.7 Linux/3.10.0-862.el7.x86_64 centos/7.5.1804 glibc/2.17
                UID:GID : 666715:2782
             netrc file : None
           offline mode : False

r-stringi icu 58.* version mismatch seem to be back with conda-forge R 3.5.1 on Linux

Latest conda-forge r-stringi fails to load with libicui18n.so.58: cannot open shared object file: No such file or directory error.

I believe only a few days ago it was working and I did a conda update --all some time and then it broke.

> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hermidalc/soft/miniconda3/lib/R/library/stringi/libs/stringi.so':
  libicui18n.so.58: cannot open shared object file: No such file or directory

Steps to reproduce on a fresh Miniconda3 install:

conda config --add channels conda-forge
conda update --all
conda install r-base=3.5.1 r-stringi
R
> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/hermidalc/soft/miniconda3/lib/R/library/stringi/libs/stringi.so':
  libicui18n.so.58: cannot open shared object file: No such file or directory

Environment (conda list): 
$ conda list
# packages in environment at /home/hermidalc/soft/miniconda3:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
_r-mutex                  1.0.1               anacondar_1    conda-forge
asn1crypto                0.24.0                py37_1003    conda-forge
binutils_impl_linux-64    2.31.1               h6176602_1  
binutils_linux-64         2.31.1               h6176602_7  
bwidget                   1.9.11                        0    conda-forge
bzip2                     1.0.8                h516909a_0    conda-forge
ca-certificates           2019.6.16            hecc5488_0    conda-forge
cairo                     1.16.0            hfb77d84_1002    conda-forge
certifi                   2019.6.16                py37_1    conda-forge
cffi                      1.12.3           py37h8022711_0    conda-forge
chardet                   3.0.4                 py37_1003    conda-forge
conda                     4.7.10                   py37_0    conda-forge
conda-package-handling    1.3.11                   py37_0    conda-forge
cryptography              2.7              py37h72c5cf5_0    conda-forge
curl                      7.65.3               hf8cf82a_0    conda-forge
fontconfig                2.13.1            h86ecdb6_1001    conda-forge
freetype                  2.10.0               he983fc9_0    conda-forge
fribidi                   1.0.5             h516909a_1002    conda-forge
gcc_impl_linux-64         7.3.0                habb00fd_1    conda-forge
gcc_linux-64              7.3.0                h553295d_7    conda-forge
gettext                   0.19.8.1          hc5be6a0_1002    conda-forge
gfortran_impl_linux-64    7.3.0                hdf63c60_1  
gfortran_linux-64         7.3.0                h553295d_7  
glib                      2.58.3            h6f030ca_1002    conda-forge
graphite2                 1.3.13            hf484d3e_1000    conda-forge
gsl                       2.5                  h294904e_0    conda-forge
gxx_impl_linux-64         7.3.0                hdf63c60_1    conda-forge
gxx_linux-64              7.3.0                h553295d_7    conda-forge
harfbuzz                  2.4.0                h9f30f68_2    conda-forge
icu                       64.2                 he1b5a44_0    conda-forge
idna                      2.8                   py37_1000    conda-forge
jpeg                      9c                h14c3975_1001    conda-forge
krb5                      1.16.3            h05b26f9_1001    conda-forge
libarchive                3.3.3             hb44662c_1005    conda-forge
libblas                   3.8.0               10_openblas    conda-forge
libcblas                  3.8.0               10_openblas    conda-forge
libcurl                   7.65.3               hda55be3_0    conda-forge
libedit                   3.1.20170329      hf8c457e_1001    conda-forge
libffi                    3.2.1             he1b5a44_1006    conda-forge
libgcc-ng                 9.1.0                hdf63c60_0  
libgfortran-ng            7.3.0                hdf63c60_0  
libiconv                  1.15              h516909a_1005    conda-forge
libopenblas               0.3.6                h6e990d7_5    conda-forge
libpng                    1.6.37               hed695b0_0    conda-forge
libssh2                   1.8.2                h22169c7_2    conda-forge
libstdcxx-ng              9.1.0                hdf63c60_0  
libtiff                   4.0.10            h57b8799_1003    conda-forge
libuuid                   2.32.1            h14c3975_1000    conda-forge
libxcb                    1.13              h14c3975_1002    conda-forge
libxml2                   2.9.9                hee79883_2    conda-forge
lz4-c                     1.8.3             he1b5a44_1001    conda-forge
lzo                       2.10              h14c3975_1000    conda-forge
make                      4.2.1             h14c3975_2004    conda-forge
ncurses                   6.1               hf484d3e_1002    conda-forge
openblas                  0.3.6                h6e990d7_5    conda-forge
openssl                   1.1.1c               h516909a_0    conda-forge
pango                     1.42.4               he7ab937_0    conda-forge
pcre                      8.41              hf484d3e_1003    conda-forge
pip                       19.2.1                   py37_0    conda-forge
pixman                    0.38.0            h516909a_1003    conda-forge
pthread-stubs             0.4               h14c3975_1001    conda-forge
pycosat                   0.6.3           py37h14c3975_1001    conda-forge
pycparser                 2.19                     py37_1    conda-forge
pyopenssl                 19.0.0                   py37_0    conda-forge
pysocks                   1.7.0                    py37_0    conda-forge
python                    3.7.3                h33d41f4_1    conda-forge
python-libarchive-c       2.8                   py37_1004    conda-forge
r-base                    3.5.1             hfb2a302_1009    conda-forge
r-stringi                 1.4.3             r35h0357c0b_2    conda-forge
readline                  8.0                  hf8c457e_0    conda-forge
requests                  2.22.0                   py37_1    conda-forge
ruamel_yaml               0.15.71         py37h14c3975_1000    conda-forge
setuptools                41.0.1                   py37_0    conda-forge
six                       1.12.0                py37_1000    conda-forge
sqlite                    3.29.0               hcee41ef_0    conda-forge
tk                        8.6.9             hed695b0_1002    conda-forge
tktable                   2.10                 h555a92e_1    conda-forge
tqdm                      4.32.2                     py_0    conda-forge
urllib3                   1.25.3                   py37_0    conda-forge
wheel                     0.33.4                   py37_0    conda-forge
xorg-kbproto              1.0.7             h14c3975_1002    conda-forge
xorg-libice               1.0.10               h516909a_0    conda-forge
xorg-libsm                1.2.3             h84519dc_1000    conda-forge
xorg-libx11               1.6.8                h516909a_0    conda-forge
xorg-libxau               1.0.9                h14c3975_0    conda-forge
xorg-libxdmcp             1.1.3                h516909a_0    conda-forge
xorg-libxext              1.3.4                h516909a_0    conda-forge
xorg-libxrender           0.9.10            h516909a_1002    conda-forge
xorg-renderproto          0.11.1            h14c3975_1002    conda-forge
xorg-xextproto            7.3.0             h14c3975_1002    conda-forge
xorg-xproto               7.0.31            h14c3975_1007    conda-forge
xz                        5.2.4             h14c3975_1001    conda-forge
yaml                      0.1.7             h14c3975_1001    conda-forge
zlib                      1.2.11            h516909a_1005    conda-forge
zstd                      1.4.0                h3b9ef0a_0    conda-forge

Details about conda and system ( conda info ): 
$ conda info

     active environment : base
    active env location : /home/hermidalc/soft/miniconda3
            shell level : 1
       user config file : /home/hermidalc/.condarc
 populated config files : /home/hermidalc/.condarc
          conda version : 4.7.10
    conda-build version : not installed
         python version : 3.7.3.final.0
       virtual packages : 
       base environment : /home/hermidalc/soft/miniconda3  (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/hermidalc/soft/miniconda3/pkgs
                          /home/hermidalc/.conda/pkgs
       envs directories : /home/hermidalc/soft/miniconda3/envs
                          /home/hermidalc/.conda/envs
               platform : linux-64
             user-agent : conda/4.7.10 requests/2.22.0 CPython/3.7.3 Linux/5.1.18-300.fc30.x86_64 fedora/30 glibc/2.29
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

ICU version mismatch

I have the following packages installed:

r-base=3.4.1=0
r-stringr=1.2.0=r3.4.1_0
icu=54.1

There are many more packages, but the important point is that some of them apparently depend on ICU 54, not 58. Then when I do load the stringi library in R I get:

> library(stringi)
Error: package or namespace load failed for 'stringi' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/data/kensche/work/share/miniconda3/envs/test/lib/R/library/stringi/libs/stringi.so':
  libicui18n.so.58: cannot open shared object file: No such file or directory
  • Should ICU not be a runtime dependency of r-stringi to ensure such problems do not occur?
  • Is it possible to get a version linked against ICU 54.0, which is the version that the set of tools that I need currently supports?

I'd be grateful for your help!

stringi.so linked to both 58 and 64 versions of libicui18n.so

Issue:

I'm running into a strange linking issue on Linux. The stringi.so library seems to be linked to two versions of libicui18n.

$ ldd stringi.so | grep icu
	libicui18n.so.64 => not found
	libicuuc.so.64 => not found
	libicuuc.so.58 => $HOME/miniconda3/envs/$ENV/lib/R/library/stringi/libs/../../../lib/../../libicuuc.so.58 (0x00007f2310247000)
	libicui18n.so.58 => $HOME/miniconda3/envs/$ENV/lib/R/library/stringi/libs/../../../lib/../../libicui18n.so.58 (0x00007f230ffc8000)
	libicudata.so.58 => $HOME/miniconda3/envs/$ENV/lib/R/library/stringi/libs/../../../lib/../.././libicudata.so.58 (0x00007f230e559000)

Environment (conda list): 
$ conda list | grep -ie icu -e r-base -e r-stringi
icu                       58.2              hf484d3e_1000    conda-forge
r-base                    3.6.1                h8900bf8_2    conda-forge
r-base64enc               0.1_3           r36hcdcec82_1003    conda-forge
r-stringi                 1.4.3             r36h0357c0b_2    conda-forge

Details about conda and system ( conda info ): 
$ conda info
     active environment : $ENV
    active env location : $HOME/miniconda3/envs/$ENV
            shell level : 1
       user config file : $HOME/.condarc
 populated config files : $HOME/.condarc
          conda version : 4.8.2
    conda-build version : not installed
         python version : 3.7.6.final.0
       virtual packages : __glibc=2.27
       base environment : $HOME/miniconda3  (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : $HOME/miniconda3/pkgs
                          $HOME/.conda/pkgs
       envs directories : $HOME/miniconda3/envs
                          $HOME/.conda/envs
               platform : linux-64
             user-agent : conda/4.8.2 requests/2.22.0 CPython/3.7.6 Linux/4.14.88-88.76.amzn2.x86_64 ubuntu/18.04.3 glibc/2.27
                UID:GID : 1002:1002
             netrc file : None
           offline mode : False

r-stringi 1.7.6 depends on old libicui18n.so.58

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

Trying to load the package:

> library(stringi)
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/opt/quarantine/software/R/4.2.0/r-base/lib/R/library/stringi/libs/stringi.so':
  libicui18n.so.58: cannot open shared object file: No such file or directory

Installed packages

# packages in environment at /opt/quarantine/software/R/4.2.0/r-base:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
_r-mutex                  1.0.1               anacondar_1    conda-forge
_sysroot_linux-64_curr_repodata_hack 3                   h69a702a_13    conda-forge
alsa-lib                  1.2.6.1              h7f98852_0    conda-forge
argcomplete               3.1.1              pyhd8ed1ab_0    conda-forge
arpack                    3.7.0                hdefa2d7_2    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
binutils_impl_linux-64    2.38                 h2a08ee3_1  
binutils_linux-64         2.38.0               hc2dff05_0  
bioconductor-annotate     1.76.0            r42hdfd78af_0    bioconda
bioconductor-annotationdbi 1.60.0            r42hdfd78af_0    bioconda
bioconductor-biobase      2.58.0            r42ha9d7317_1    bioconda
bioconductor-biocgenerics 0.44.0            r42hdfd78af_0    bioconda
bioconductor-biocparallel 1.32.5            r42hf17093f_1    bioconda
bioconductor-biocviews    1.66.0            r42hdfd78af_0    bioconda
bioconductor-biostrings   2.66.0            r42ha9d7317_1    bioconda
bioconductor-data-packages 20230718             hdfd78af_1    bioconda
bioconductor-delayedarray 0.24.0            r42ha9d7317_1    bioconda
bioconductor-deseq2       1.38.0            r42hf17093f_1    bioconda
bioconductor-edger        3.40.0            r42hf17093f_1    bioconda
bioconductor-genefilter   1.80.0            r42ha1e849b_1    bioconda
bioconductor-geneplotter  1.76.0            r42hdfd78af_0    bioconda
bioconductor-genomeinfodb 1.34.9            r42hdfd78af_0    bioconda
bioconductor-genomeinfodbdata 1.2.9             r42hdfd78af_0    bioconda
bioconductor-genomicranges 1.50.0            r42ha9d7317_1    bioconda
bioconductor-graph        1.76.0            r42ha9d7317_1    bioconda
bioconductor-hsmmsinglecell 1.18.0            r42hdfd78af_0    bioconda
bioconductor-iranges      2.32.0            r42ha9d7317_1    bioconda
bioconductor-keggrest     1.38.0            r42hdfd78af_0    bioconda
bioconductor-limma        3.54.0            r42ha9d7317_1    bioconda
bioconductor-mast         1.24.0            r42hdfd78af_0    bioconda
bioconductor-matrixgenerics 1.10.0            r42hdfd78af_0    bioconda
bioconductor-monocle      2.26.0            r42hf17093f_1    bioconda
bioconductor-qvalue       2.30.0            r42hdfd78af_0    bioconda
bioconductor-rbgl         1.74.0            r42hf17093f_1    bioconda
bioconductor-rhtslib      2.0.0             r42ha9d7317_1    bioconda
bioconductor-rots         1.26.0            r42hf17093f_1    bioconda
bioconductor-rsamtools    2.14.0            r42hf17093f_1    bioconda
bioconductor-s4vectors    0.36.0            r42ha9d7317_1    bioconda
bioconductor-singlecellexperiment 1.20.0            r42hdfd78af_0    bioconda
bioconductor-summarizedexperiment 1.28.0            r42hdfd78af_0    bioconda
bioconductor-sva          3.46.0            r42ha9d7317_1    bioconda
bioconductor-variancepartition 1.28.0            r42hdfd78af_0    bioconda
bioconductor-xvector      0.38.0            r42ha9d7317_1    bioconda
bioconductor-zlibbioc     1.44.0            r42ha9d7317_2    bioconda
blas                      1.0                    openblas  
bwidget                   1.9.14               ha770c72_1    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.19.1               hd590300_0    conda-forge
ca-certificates           2023.7.22            hbcca054_0    conda-forge
cairo                     1.16.0               hb05425b_5  
cffi                      1.15.1          py311h409f033_3    conda-forge
curl                      7.86.0               h2283fc2_1    conda-forge
expat                     2.5.0                hcb278e6_1    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
gcc_impl_linux-64         11.2.0               h1234567_1  
gcc_linux-64              11.2.0               h5c386dc_0  
gdk-pixbuf                2.42.8               hff1cb4f_1    conda-forge
geos                      3.12.0               h59595ed_0    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
gfortran_impl_linux-64    11.2.0              h7a446d4_16    conda-forge
gfortran_linux-64         11.2.0               hc2dff05_0  
giflib                    5.2.1                h0b41bf4_3    conda-forge
glib                      2.74.1               h6239696_0    conda-forge
glib-tools                2.74.1               h6239696_0    conda-forge
glpk                      5.0                  h445213a_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
graphite2                 1.3.14               h295c915_1  
gsl                       2.7                  he838d99_0    conda-forge
gxx_impl_linux-64         11.2.0               h1234567_1  
gxx_linux-64              11.2.0               hc2dff05_0  
harfbuzz                  6.0.0                h8e241bc_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
igraph                    0.10.2               ha1f048c_0    conda-forge
jpeg                      9e                   h0b41bf4_3    conda-forge
jq                        1.6               h36c2ea0_1000    conda-forge
kernel-headers_linux-64   4.18.0               he073ed8_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.19.3               h08a2579_0    conda-forge
lcms2                     2.14                 h6ed2654_0    conda-forge
ld_impl_linux-64          2.38                 h1181459_1  
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           17_linux64_openblas    conda-forge
libcblas                  3.9.0           17_linux64_openblas    conda-forge
libcups                   2.3.3                h3e49a29_2    conda-forge
libcurl                   7.86.0               h2283fc2_1    conda-forge
libdeflate                1.14                 h166bdaf_0    conda-forge
libedit                   3.1.20221030         h5eee18b_0  
libev                     4.33                 h516909a_1    conda-forge
libexpat                  2.5.0                hcb278e6_1    conda-forge
libffi                    3.4.4                h6a678d5_0  
libgcc-devel_linux-64     11.2.0               h1234567_1  
libgcc-ng                 13.1.0               he5830b7_0    conda-forge
libgfortran-ng            13.1.0               h69a702a_0    conda-forge
libgfortran5              13.1.0               h15d22d2_0    conda-forge
libglib                   2.74.1               h7a41b64_0    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libgomp                   13.1.0               he5830b7_0    conda-forge
libhwloc                  2.8.0                h32351e8_1    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
liblapack                 3.9.0           17_linux64_openblas    conda-forge
libnghttp2                1.52.0               h61bc06f_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.23          pthreads_h80387f5_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
librsvg                   2.54.4               h7abd40a_0    conda-forge
libsqlite                 3.43.0               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-devel_linux-64  11.2.0               h1234567_1  
libstdcxx-ng              13.1.0               hfd8a6a1_0    conda-forge
libtiff                   4.4.0                h82bc61c_5    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libv8                     8.9.83               h7465d70_2    conda-forge
libwebp-base              1.3.1                hd590300_0    conda-forge
libxcb                    1.16                 hd590300_0    conda-forge
libxml2                   2.9.14               h22db469_4    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
make                      4.3                  hd18ef5c_1    conda-forge
metis                     5.1.1                h59595ed_1    conda-forge
mpfr                      4.2.0                hb012696_0    conda-forge
ncurses                   6.4                  hcb278e6_0    conda-forge
nlopt                     2.7.1           py311he53e775_3    conda-forge
numpy                     1.25.2          py311h64a7726_0    conda-forge
oniguruma                 6.9.8                h166bdaf_0    conda-forge
openjdk                   11.0.1            h516909a_1016    conda-forge
openssl                   3.1.3                hd590300_0    conda-forge
pandoc                    3.1.3                h32600fe_0    conda-forge
pango                     1.50.14              hd33c08f_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.37                hc3806b6_1    conda-forge
pip                       23.2.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.16.1             pyhd8ed1ab_0    conda-forge
python                    3.11.0          he550d4f_1_cpython    conda-forge
python_abi                3.11                    3_cp311    conda-forge
pyyaml                    6.0.1           py311h459d7ec_0    conda-forge
r-abind                   1.4_5           r42hc72bb7e_1005    conda-forge
r-aod                     1.3.2             r42ha770c72_2    conda-forge
r-arm                     1.13_1            r42hc72bb7e_2    conda-forge
r-arrayhelpers            1.1_0             r42hc72bb7e_3    conda-forge
r-askpass                 1.1               r42h57805ef_4    conda-forge
r-assertthat              0.2.1             r42hc72bb7e_4    conda-forge
r-backports               1.4.1             r42h57805ef_2    conda-forge
r-base                    4.2.1                h7880091_2    conda-forge
r-base64enc               0.1_3           r42h57805ef_1006    conda-forge
r-base64url               1.4             r42h57805ef_1006    conda-forge
r-batchtools              0.9.17            r42h57805ef_1    conda-forge
r-bayestestr              0.13.1            r42hc72bb7e_1    conda-forge
r-beeswarm                0.4.0             r42h57805ef_3    conda-forge
r-bh                      1.81.0_1          r42hc72bb7e_1    conda-forge
r-bigassertr              0.1.6             r42hc72bb7e_1    conda-forge
r-biglm                   0.9_2.1           r42h61816a4_2    conda-forge
r-bigparallelr            0.3.2             r42hc72bb7e_2    conda-forge
r-bigstatsr               1.5.12            r42h08d816e_2    conda-forge
r-biocmanager             1.30.22           r42hc72bb7e_0    conda-forge
r-bit                     4.0.5             r42h57805ef_1    conda-forge
r-bit64                   4.0.5             r42h57805ef_2    conda-forge
r-bitops                  1.0_7             r42h57805ef_2    conda-forge
r-blob                    1.2.4             r42hc72bb7e_1    conda-forge
r-boot                    1.3_28.1          r42hc72bb7e_1    conda-forge
r-brew                    1.0_8             r42hc72bb7e_2    conda-forge
r-brio                    1.1.3             r42h57805ef_2    conda-forge
r-broom                   1.0.5             r42hc72bb7e_1    conda-forge
r-bslib                   0.5.1             r42hc72bb7e_0    conda-forge
r-cachem                  1.0.8             r42h57805ef_1    conda-forge
r-callr                   3.7.3             r42hc72bb7e_1    conda-forge
r-car                     3.1_2             r42hc72bb7e_1    conda-forge
r-cardata                 3.0_5             r42hc72bb7e_2    conda-forge
r-caret                   6.0_94            r42h57805ef_1    conda-forge
r-catools                 1.18.2            r42ha503ecb_2    conda-forge
r-cellranger              1.1.0           r42hc72bb7e_1006    conda-forge
r-checkmate               2.2.0             r42h57805ef_1    conda-forge
r-class                   7.3_22            r42h57805ef_1    conda-forge
r-cli                     3.6.1             r42ha503ecb_1    conda-forge
r-cliapp                  0.1.1             r42hc72bb7e_2    conda-forge
r-clipr                   0.8.0             r42hc72bb7e_2    conda-forge
r-clock                   0.7.0             r42ha503ecb_1    conda-forge
r-cluster                 2.1.4             r42h61816a4_1    conda-forge
r-coda                    0.19_4            r42hc72bb7e_2    conda-forge
r-codetools               0.2_19            r42hc72bb7e_1    conda-forge
r-colorspace              2.1_0             r42h57805ef_1    conda-forge
r-combinat                0.0_8           r42hc72bb7e_1005    conda-forge
r-commonmark              1.9.0             r42h57805ef_1    conda-forge
r-conflicted              1.2.0             r42h785f33e_1    conda-forge
r-conquer                 1.3.3             r42h08d816e_2    conda-forge
r-corpcor                 1.6.10            r42hc72bb7e_2    conda-forge
r-corrplot                0.92              r42hc72bb7e_2    conda-forge
r-cowplot                 1.1.1             r42hc72bb7e_2    conda-forge
r-cpp11                   0.4.6             r42hc72bb7e_0    conda-forge
r-crayon                  1.5.2             r42hc72bb7e_2    conda-forge
r-crosstalk               1.2.0             r42hc72bb7e_2    conda-forge
r-curl                    4.3.3             r42h06615bd_1    conda-forge
r-data.table              1.14.8            r42h029312a_2    conda-forge
r-data.tree               1.0.0             r42hd8ed1ab_2    conda-forge
r-datawizard              0.8.0             r42hc72bb7e_0    conda-forge
r-dbi                     1.1.3             r42hc72bb7e_2    conda-forge
r-dbplyr                  2.3.3             r42hc72bb7e_0    conda-forge
r-ddrtree                 0.1.5           r42h59595ed_1006    conda-forge
r-deldir                  1.0_9             r42h61816a4_1    conda-forge
r-densityclust            0.3.2             r42ha503ecb_2    conda-forge
r-deoptimr                1.1_2             r42hc72bb7e_0    conda-forge
r-desc                    1.4.2             r42hc72bb7e_2    conda-forge
r-diagram                 1.6.5             r42ha770c72_2    conda-forge
r-diagrammer              1.0.10            r42hc72bb7e_1    conda-forge
r-diagrammersvg           0.1               r42hc72bb7e_2    conda-forge
r-diffobj                 0.3.5             r42h57805ef_2    conda-forge
r-digest                  0.6.33            r42ha503ecb_0    conda-forge
r-distributional          0.3.2             r42hc72bb7e_1    conda-forge
r-docopt                  0.7.1             r42hc72bb7e_3    conda-forge
r-doparallel              1.0.17            r42hc72bb7e_2    conda-forge
r-downloader              0.4             r42hc72bb7e_1005    conda-forge
r-dplyr                   1.1.2             r42ha503ecb_1    conda-forge
r-dqrng                   0.3.0             r42ha503ecb_2    conda-forge
r-dt                      0.28              r42hc72bb7e_1    conda-forge
r-dtplyr                  1.3.1             r42hc72bb7e_1    conda-forge
r-e1071                   1.7_13            r42ha503ecb_1    conda-forge
r-ellipsis                0.3.2             r42h57805ef_2    conda-forge
r-emmeans                 1.8.8             r42hc72bb7e_0    conda-forge
r-envstats                2.8.0             r42ha770c72_0    conda-forge
r-estimability            1.4.1             r42hc72bb7e_2    conda-forge
r-evaluate                0.21              r42hc72bb7e_1    conda-forge
r-fansi                   1.0.4             r42h57805ef_1    conda-forge
r-farver                  2.1.1             r42ha503ecb_2    conda-forge
r-fastdummies             1.7.3             r42hc72bb7e_0    conda-forge
r-fastica                 1.2_3             r42h316c678_2    conda-forge
r-fastmap                 1.1.1             r42ha503ecb_1    conda-forge
r-fastmatch               1.1_4             r42h57805ef_0    conda-forge
r-fdrtool                 1.2.17            r42h57805ef_2    conda-forge
r-ff                      4.0.9             r42h59595ed_1    conda-forge
r-filelock                1.0.2           r42h57805ef_1004    conda-forge
r-fitdistrplus            1.1_11            r42hc72bb7e_1    conda-forge
r-flock                   0.7             r42ha503ecb_1005    conda-forge
r-fnn                     1.1.3.2           r42ha503ecb_1    conda-forge
r-fontawesome             0.5.2             r42hc72bb7e_0    conda-forge
r-forcats                 1.0.0             r42hc72bb7e_1    conda-forge
r-foreach                 1.5.2             r42hc72bb7e_2    conda-forge
r-foreign                 0.8_84            r42h57805ef_1    conda-forge
r-formatr                 1.14              r42hc72bb7e_1    conda-forge
r-formula                 1.2_5             r42hc72bb7e_1    conda-forge
r-fs                      1.6.3             r42ha503ecb_0    conda-forge
r-futile.logger           1.4.3           r42hc72bb7e_1005    conda-forge
r-futile.options          1.0.1           r42hc72bb7e_1004    conda-forge
r-future                  1.33.0            r42hc72bb7e_0    conda-forge
r-future.apply            1.11.0            r42hc72bb7e_1    conda-forge
r-gamm4                   0.2_6             r42hc72bb7e_3    conda-forge
r-gargle                  1.5.2             r42h785f33e_0    conda-forge
r-gbrd                    0.4_11          r42hc72bb7e_1005    conda-forge
r-gdata                   2.19.0            r42hc72bb7e_1    conda-forge
r-geepack                 1.3.9             r42h59595ed_1    conda-forge
r-generics                0.1.3             r42hc72bb7e_2    conda-forge
r-ggally                  2.1.2             r42hc72bb7e_2    conda-forge
r-ggbeeswarm              0.7.2             r42hc72bb7e_1    conda-forge
r-ggdist                  3.3.0             r42hc72bb7e_1    conda-forge
r-ggplot2                 3.4.3             r42hc72bb7e_0    conda-forge
r-ggpubr                  0.6.0             r42hc72bb7e_1    conda-forge
r-ggrepel                 0.9.3             r42ha503ecb_1    conda-forge
r-ggridges                0.5.4             r42hc72bb7e_2    conda-forge
r-ggsci                   3.0.0             r42hc72bb7e_1    conda-forge
r-ggsignif                0.6.4             r42hc72bb7e_1    conda-forge
r-glasso                  1.11              r42h61816a4_4    conda-forge
r-glmmtmb                 1.1.7             r42ha503ecb_1    conda-forge
r-globals                 0.16.2            r42hc72bb7e_1    conda-forge
r-glue                    1.6.2             r42h57805ef_2    conda-forge
r-goftest                 1.2_3             r42h57805ef_2    conda-forge
r-googledrive             2.1.1             r42hc72bb7e_1    conda-forge
r-googlesheets4           1.1.1             r42h785f33e_1    conda-forge
r-gower                   1.0.1             r42h57805ef_1    conda-forge
r-gplots                  3.1.3             r42hc72bb7e_2    conda-forge
r-gridbase                0.4_7           r42hc72bb7e_1005    conda-forge
r-gridextra               2.3             r42hc72bb7e_1005    conda-forge
r-gtable                  0.3.4             r42hc72bb7e_0    conda-forge
r-gtools                  3.9.4             r42h57805ef_1    conda-forge
r-hardhat                 1.3.0             r42hc72bb7e_1    conda-forge
r-haven                   2.5.3             r42ha503ecb_0    conda-forge
r-hdinterval              0.2.4             r42hc72bb7e_1    conda-forge
r-here                    1.0.1             r42hc72bb7e_2    conda-forge
r-hexbin                  1.28.3            r42h61816a4_1    conda-forge
r-highr                   0.10              r42hc72bb7e_1    conda-forge
r-hmisc                   5.1_0             r42h61816a4_1    conda-forge
r-hms                     1.1.3             r42hc72bb7e_1    conda-forge
r-hotelling               1.0_8             r42hc72bb7e_1    conda-forge
r-htmltable               2.4.1             r42hc72bb7e_2    conda-forge
r-htmltools               0.5.6             r42ha503ecb_0    conda-forge
r-htmlwidgets             1.6.2             r42hc72bb7e_1    conda-forge
r-httpuv                  1.6.11            r42ha503ecb_1    conda-forge
r-httr                    1.4.7             r42hc72bb7e_0    conda-forge
r-huge                    1.3.5             r42ha503ecb_2    conda-forge
r-ica                     1.0_3             r42hc72bb7e_2    conda-forge
r-ids                     1.0.1             r42hc72bb7e_3    conda-forge
r-igraph                  1.3.5             r42hb34fc8a_0    conda-forge
r-influencer              0.1.5             r42h57805ef_1    conda-forge
r-insight                 0.19.3            r42hc72bb7e_0    conda-forge
r-interp                  1.1_4             r42hcf54a89_1    conda-forge
r-ipred                   0.9_14            r42h57805ef_1    conda-forge
r-irlba                   2.3.5.1           r42h316c678_1    conda-forge
r-isoband                 0.2.7             r42ha503ecb_2    conda-forge
r-iterators               1.0.14            r42hc72bb7e_2    conda-forge
r-jpeg                    0.1_10            r42h06615bd_0    conda-forge
r-jquerylib               0.1.4             r42hc72bb7e_2    conda-forge
r-jsonlite                1.8.7             r42h57805ef_0    conda-forge
r-jtools                  2.2.2             r42hc72bb7e_0    conda-forge
r-kernsmooth              2.23_22           r42h13b3f57_0    conda-forge
r-knitr                   1.43              r42hc72bb7e_1    conda-forge
r-kutils                  1.73              r42hc72bb7e_0    conda-forge
r-labeling                0.4.3             r42hc72bb7e_0    conda-forge
r-lambda.r                1.2.4             r42hc72bb7e_3    conda-forge
r-later                   1.3.1             r42ha503ecb_1    conda-forge
r-latexpdf                0.1.7             r42h142f84f_0  
r-lattice                 0.21_8            r42h57805ef_1    conda-forge
r-latticeextra            0.6_30            r42hc72bb7e_2    conda-forge
r-lava                    1.7.2.1           r42hc72bb7e_1    conda-forge
r-lavaan                  0.6_16            r42hc72bb7e_0    conda-forge
r-lazyeval                0.2.2             r42h57805ef_4    conda-forge
r-leiden                  0.4.3             r42hc72bb7e_2    conda-forge
r-leidenbase              0.1.12            r42h6efe872_0    bioconda
r-lifecycle               1.0.3             r42hc72bb7e_2    conda-forge
r-lisreltor               0.1.5             r42hc72bb7e_2    conda-forge
r-listenv                 0.9.0             r42hc72bb7e_1    conda-forge
r-lme4                    1.1_34            r42ha503ecb_0    conda-forge
r-lmertest                3.1_3             r42hc72bb7e_2    conda-forge
r-lmtest                  0.9_40            r42h61816a4_2    conda-forge
r-locfit                  1.5_9.8           r42h57805ef_1    conda-forge
r-lpsolve                 5.6.18            r42h57805ef_1    conda-forge
r-lsei                    1.3_0             r42hd8f1df9_3    conda-forge
r-lubridate               1.9.2             r42h57805ef_2    conda-forge
r-magrittr                2.0.3             r42h57805ef_2    conda-forge
r-manipulatewidget        0.11.1            r42hc72bb7e_2    conda-forge
r-maptools                1.1_8             r42h57805ef_0    conda-forge
r-mass                    7.3_60            r42h57805ef_1    conda-forge
r-matrix                  1.6_1             r42h316c678_0    conda-forge
r-matrixcalc              1.0_6             r42hc72bb7e_2    conda-forge
r-matrixmodels            0.5_2             r42hc72bb7e_0    conda-forge
r-matrixstats             1.0.0             r42h57805ef_1    conda-forge
r-mclust                  6.0.0             r42hd9ac46e_1    conda-forge
r-memoise                 2.0.1             r42hc72bb7e_2    conda-forge
r-mgcv                    1.9_0             r42h316c678_0    conda-forge
r-mi                      1.1               r42hc72bb7e_2    conda-forge
r-mime                    0.12              r42h57805ef_2    conda-forge
r-miniui                  0.1.1.1         r42hc72bb7e_1004    conda-forge
r-minqa                   1.2.5             r42hcf54a89_1    conda-forge
r-mnormt                  2.1.1             r42h61816a4_1    conda-forge
r-modelmetrics            1.2.2.2           r42ha503ecb_3    conda-forge
r-modelr                  0.1.11            r42hc72bb7e_1    conda-forge
r-munsell                 0.5.0           r42hc72bb7e_1006    conda-forge
r-mvnfast                 0.2.8             r42h08d816e_1    conda-forge
r-mvtnorm                 1.2_3             r42hd9ac46e_0    conda-forge
r-nlme                    3.1_163           r42h61816a4_0    conda-forge
r-nloptr                  2.0.3             r42hcf54a89_2    conda-forge
r-nnet                    7.3_19            r42h57805ef_1    conda-forge
r-nortest                 1.0_4           r42hc72bb7e_1005    conda-forge
r-npsurv                  0.5_0             r42hc72bb7e_2    conda-forge
r-numderiv                2016.8_1.1        r42hc72bb7e_5    conda-forge
r-openmx                  2.21.8            r42hcf54a89_1    conda-forge
r-openssl                 2.1.1             r42hb353fa6_0    conda-forge
r-openxlsx                4.2.5.2           r42ha503ecb_1    conda-forge
r-pak                     0.6.0             r42hc72bb7e_0    conda-forge
r-pander                  0.6.5             r42ha503ecb_2    conda-forge
r-parallelly              1.36.0            r42hc72bb7e_1    conda-forge
r-patchwork               1.1.3             r42hc72bb7e_0    conda-forge
r-pbapply                 1.7_2             r42hc72bb7e_0    conda-forge
r-pbivnorm                0.6.0           r42h61816a4_1008    conda-forge
r-pbkrtest                0.5.2             r42hc72bb7e_1    conda-forge
r-performance             0.10.4            r42hc72bb7e_1    conda-forge
r-pheatmap                1.0.12            r42hc72bb7e_4    conda-forge
r-pillar                  1.9.0             r42hc72bb7e_1    conda-forge
r-pkgbuild                1.4.2             r42hc72bb7e_0    conda-forge
r-pkgcache                2.2.0.1           r42hc72bb7e_0    conda-forge
r-pkgconfig               2.0.3             r42hc72bb7e_3    conda-forge
r-pkgdepends              0.6.0             r42hc72bb7e_0    conda-forge
r-pkgload                 1.3.2.1           r42hc72bb7e_0    conda-forge
r-plogr                   0.2.0           r42hc72bb7e_1005    conda-forge
r-plotly                  4.10.2            r42hc72bb7e_1    conda-forge
r-plotrix                 3.8_2             r42hc72bb7e_2    conda-forge
r-plyr                    1.8.8             r42ha503ecb_1    conda-forge
r-png                     0.1_8             r42h81d01c5_1    conda-forge
r-polyclip                1.10_4            r42ha503ecb_1    conda-forge
r-polynom                 1.4_1             r42hc72bb7e_2    conda-forge
r-posterior               1.4.1             r42hc72bb7e_1    conda-forge
r-praise                  1.0.0           r42hc72bb7e_1007    conda-forge
r-prettycode              1.1.0             r42hc72bb7e_3    conda-forge
r-prettyunits             1.1.1             r42hc72bb7e_3    conda-forge
r-proc                    1.18.4            r42ha503ecb_0    conda-forge
r-processx                3.8.2             r42h57805ef_0    conda-forge
r-prodlim                 2023.08.28        r42ha503ecb_0    conda-forge
r-progress                1.2.2             r42hc72bb7e_4    conda-forge
r-progressr               0.14.0            r42hc72bb7e_0    conda-forge
r-promises                1.2.1             r42ha503ecb_0    conda-forge
r-proxy                   0.4_27            r42h57805ef_2    conda-forge
r-ps                      1.7.5             r42h57805ef_1    conda-forge
r-psych                   2.3.9             r42hc72bb7e_0    conda-forge
r-purrr                   1.0.1             r42h57805ef_1    conda-forge
r-qgam                    1.3.4             r42h57805ef_2    conda-forge
r-qgraph                  1.9.5             r42ha503ecb_1    conda-forge
r-qlcmatrix               0.9.7           r42hc72bb7e_1004    conda-forge
r-quadprog                1.5_8             r42h13b3f57_5    conda-forge
r-quantreg                5.97              r42hd9ac46e_0    conda-forge
r-r.matlab                3.7.0             r42hc72bb7e_2    conda-forge
r-r.methodss3             1.8.2             r42hc72bb7e_2    conda-forge
r-r.oo                    1.25.0            r42hc72bb7e_2    conda-forge
r-r.utils                 2.12.2            r42hc72bb7e_1    conda-forge
r-r6                      2.5.1             r42hc72bb7e_2    conda-forge
r-ragg                    1.2.4             r42hc1f6985_0    conda-forge
r-rann                    2.6.1             r42ha503ecb_4    conda-forge
r-rappdirs                0.3.3             r42h57805ef_2    conda-forge
r-rbibutils               2.2.15            r42h57805ef_0    conda-forge
r-rcolorbrewer            1.1_3             r42h785f33e_2    conda-forge
r-rcpp                    1.0.11            r42h7df8631_0    conda-forge
r-rcppannoy               0.0.21            r42ha503ecb_0    conda-forge
r-rcpparmadillo           0.12.6.3.0        r42h08d816e_0    conda-forge
r-rcppeigen               0.3.3.9.3         r42h08d816e_1    conda-forge
r-rcppparallel            5.1.6             r42ha503ecb_1    conda-forge
r-rcppprogress            0.4.2             r42hc72bb7e_3    conda-forge
r-rcpproll                0.3.0           r42ha503ecb_1004    conda-forge
r-rcpptoml                0.2.2             r42ha503ecb_1    conda-forge
r-rcurl                   1.98_1.9          r42h06615bd_1    conda-forge
r-rdpack                  2.5               r42hc72bb7e_0    conda-forge
r-readr                   2.1.4             r42ha503ecb_1    conda-forge
r-readxl                  1.4.3             r42ha5c9fba_0    conda-forge
r-recipes                 1.0.8             r42hc72bb7e_0    conda-forge
r-regsem                  1.9.5             r42h9c1d1bc_1    conda-forge
r-rematch                 2.0.0             r42hc72bb7e_0    conda-forge
r-rematch2                2.1.2             r42hc72bb7e_3    conda-forge
r-remotes                 2.4.2.1           r42hc72bb7e_0    conda-forge
r-reprex                  2.0.2             r42hc72bb7e_2    conda-forge
r-reshape                 0.8.9             r42hc72bb7e_2    conda-forge
r-reshape2                1.4.4             r42ha503ecb_3    conda-forge
r-reticulate              1.31              r42ha503ecb_0    conda-forge
r-rgeos                   0.6_4             r42hb58d41b_0    conda-forge
r-rgexf                   0.16.2            r42hc72bb7e_2    conda-forge
r-rgl                     1.2.1             r42h0a40d00_0    conda-forge
r-rhpcblasctl             0.23_42           r42h57805ef_1    conda-forge
r-rio                     0.5.30            r42hc72bb7e_0    conda-forge
r-rjava                   1.0_6             r42h57805ef_7    conda-forge
r-rjson                   0.2.21            r42ha503ecb_3    conda-forge
r-rlang                   1.1.1             r42ha503ecb_1    conda-forge
r-rmarkdown               2.24              r42hc72bb7e_0    conda-forge
r-rmio                    0.4.0             r42hc72bb7e_2    conda-forge
r-rockchalk               1.8.157           r42hc72bb7e_2    conda-forge
r-rocr                    1.0_11            r42hc72bb7e_3    conda-forge
r-rpart                   4.1.19            r42h57805ef_1    conda-forge
r-rpf                     1.0.14            r42ha503ecb_0    conda-forge
r-rprojroot               2.0.3             r42hc72bb7e_1    conda-forge
r-rsolnp                  1.16            r42ha770c72_1005    conda-forge
r-rspectra                0.16_1            r42h08d816e_2    conda-forge
r-rsqlite                 2.3.1             r42ha503ecb_1    conda-forge
r-rstatix                 0.7.2             r42hc72bb7e_1    conda-forge
r-rstudioapi              0.15.0            r42hc72bb7e_0    conda-forge
r-rsvg                    2.4.0             r42ha0f4192_0    conda-forge
r-rtsne                   0.16              r42h7ce84a7_2    conda-forge
r-runit                   0.4.32          r42hc72bb7e_1004    conda-forge
r-rvest                   1.0.3             r42hc72bb7e_2    conda-forge
r-sandwich                3.0_2             r42hc72bb7e_2    conda-forge
r-sass                    0.4.7             r42ha503ecb_0    conda-forge
r-scales                  1.2.1             r42hc72bb7e_2    conda-forge
r-scattermore             1.2               r42ha503ecb_1    conda-forge
r-sctransform             0.3.5             r42h08d816e_2    conda-forge
r-selectr                 0.4_2             r42hc72bb7e_3    conda-forge
r-sem                     3.1_15            r42ha503ecb_2    conda-forge
r-semplot                 1.1.6             r42hc72bb7e_2    conda-forge
r-servr                   0.27              r42hc72bb7e_1    conda-forge
r-seurat                  4.3.0.1           r42ha503ecb_0    conda-forge
r-seuratobject            4.1.3             r42ha503ecb_1    conda-forge
r-shape                   1.4.6             r42ha770c72_2    conda-forge
r-shiny                   1.7.5             r42h785f33e_0    conda-forge
r-shinyjs                 2.1.0             r42hc72bb7e_2    conda-forge
r-signac                  1.10.0            r42h21a89ab_1    bioconda
r-sitmo                   2.0.2             r42ha503ecb_2    conda-forge
r-slam                    0.1_50            r42h1df0287_3    conda-forge
r-snow                    0.4_4             r42hc72bb7e_2    conda-forge
r-sourcetools             0.1.7_1           r42ha503ecb_1    conda-forge
r-sp                      2.0_0             r42h57805ef_0    conda-forge
r-sparsem                 1.81              r42h61816a4_2    conda-forge
r-sparsesvd               0.2_2             r42h57805ef_1    conda-forge
r-spatstat.data           3.0_1             r42hc72bb7e_1    conda-forge
r-spatstat.explore        3.2_1             r42h57805ef_1    conda-forge
r-spatstat.geom           3.2_4             r42h57805ef_0    conda-forge
r-spatstat.random         3.1_5             r42ha503ecb_1    conda-forge
r-spatstat.sparse         3.0_2             r42h57805ef_0    conda-forge
r-spatstat.utils          3.0_3             r42h57805ef_1    conda-forge
r-speedglm                0.3_5             r42hc72bb7e_1    conda-forge
r-squarem                 2021.1            r42hc72bb7e_2    conda-forge
r-stanheaders             2.26.28           r42hcf54a89_0    conda-forge
r-statmod                 1.5.0             r42hd8f1df9_1    conda-forge
r-stringi                 1.7.6             r42h884c59f_0  
r-stringr                 1.5.0             r42h785f33e_1    conda-forge
r-suppdists               1.1_9.7           r42ha503ecb_2    conda-forge
r-survival                3.5_7             r42h57805ef_0    conda-forge
r-svglite                 2.1.1             r42h329214f_1    conda-forge
r-svunit                  1.0.6             r42hc72bb7e_2    conda-forge
r-sys                     3.4.2             r42h57805ef_1    conda-forge
r-systemfonts             1.0.4             r42haf97adc_2    conda-forge
r-tensor                  1.5             r42hc72bb7e_1005    conda-forge
r-tensora                 0.36.2            r42h57805ef_2    conda-forge
r-testthat                3.1.10            r42ha503ecb_0    conda-forge
r-textshaping             0.3.6             r42h884c59f_0  
r-tibble                  3.2.1             r42h57805ef_2    conda-forge
r-tidybayes               3.0.6             r42hc72bb7e_0    conda-forge
r-tidyr                   1.3.0             r42ha503ecb_1    conda-forge
r-tidyselect              1.2.0             r42hc72bb7e_1    conda-forge
r-tidyverse               1.3.2             r42hc72bb7e_1    conda-forge
r-timechange              0.2.0             r42ha503ecb_1    conda-forge
r-timedate                4022.108          r42hc72bb7e_1    conda-forge
r-tinytex                 0.46              r42hc72bb7e_0    conda-forge
r-tmb                     1.9.6             r42h08d816e_0    conda-forge
r-tmvnsim                 1.0_2             r42h61816a4_5    conda-forge
r-truncnorm               1.0_9             r42h57805ef_1    conda-forge
r-tzdb                    0.4.0             r42ha503ecb_1    conda-forge
r-utf8                    1.2.3             r42h57805ef_1    conda-forge
r-uuid                    1.1_1             r42h57805ef_0    conda-forge
r-uwot                    0.1.16            r42ha503ecb_0    conda-forge
r-v8                      4.3.0             r42h3877ea8_0    conda-forge
r-vctrs                   0.6.3             r42ha503ecb_0    conda-forge
r-vgam                    1.1_8             r42h61816a4_1    conda-forge
r-vipor                   0.4.5           r42hc72bb7e_1005    conda-forge
r-viridis                 0.6.4             r42hc72bb7e_0    conda-forge
r-viridislite             0.4.2             r42hc72bb7e_1    conda-forge
r-visnetwork              2.1.2             r42hc72bb7e_2    conda-forge
r-vroom                   1.6.3             r42ha503ecb_1    conda-forge
r-waldo                   0.5.1             r42hc72bb7e_1    conda-forge
r-webshot                 0.5.5             r42hc72bb7e_0    conda-forge
r-withr                   2.5.0             r42hc72bb7e_2    conda-forge
r-xfun                    0.40              r42ha503ecb_0    conda-forge
r-xlsx                    0.6.5             r42hc72bb7e_2    conda-forge
r-xlsxjars                0.6.1             r42hc72bb7e_5    conda-forge
r-xml                     3.99_0.11         r42h2b86b34_2    conda-forge
r-xml2                    1.3.3             r42h044e5c7_2    conda-forge
r-xtable                  1.8_4             r42hc72bb7e_5    conda-forge
r-yaml                    2.3.7             r42h57805ef_1    conda-forge
r-zip                     2.3.0             r42h57805ef_1    conda-forge
r-zoo                     1.8_12            r42h57805ef_1    conda-forge
radian                    0.6.7              pyhd8ed1ab_0    conda-forge
rchitect                  0.4.2           py311h459d7ec_0    conda-forge
readline                  8.2                  h8228510_1    conda-forge
sed                       4.8                  he412f7d_0    conda-forge
setuptools                68.1.2             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sqlite                    3.43.0               h2c6b66d_0    conda-forge
suitesparse               5.10.1               he2db622_2  
sysroot_linux-64          2.28                 he073ed8_0    conda-forge
tbb                       2021.7.0             h924138e_1    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tktable                   2.10                 hb7b940f_3    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomlkit                   0.12.1             pyha770c72_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
wcwidth                   0.2.6              pyhd8ed1ab_0    conda-forge
wheel                     0.41.2             pyhd8ed1ab_0    conda-forge
xmltodict                 0.13.0             pyhd8ed1ab_0    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-inputproto           2.3.2             h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxi                1.7.10               h7f98852_0    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-libxt                1.2.1                h7f98852_2    conda-forge
xorg-libxtst              1.2.3             h7f98852_1002    conda-forge
xorg-recordproto          1.14.2            h7f98852_1002    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.4.2                h5eee18b_0  
yaml                      0.2.5                h7f98852_2    conda-forge
yq                        3.2.2              pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge

Environment info

mamba version : 1.4.9
     active environment : /opt/quarantine/software/R/4.2.0/r-base
    active env location : /opt/quarantine/software/R/4.2.0/r-base
            shell level : 2
       user config file : /home/cic/devgab/.condarc
 populated config files : /home/cic/devgab/.condarc
                          /opt/quarantine/software/R/4.2.0/r-base/.condarc
          conda version : 23.3.1
    conda-build version : 3.24.0
         python version : 3.10.12.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=12.2=0
                          __glibc=2.35=0
                          __linux=6.5.7=0
                          __unix=0=0
       base environment : /opt/quarantine/software/anaconda/2023.03-1/install  (writable)
      conda av data dir : /opt/quarantine/software/anaconda/2023.03-1/install/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /opt/quarantine/software/anaconda/2023.03-1/install/pkgs
                          /home/cic/devgab/.conda/pkgs
       envs directories : /opt/quarantine/software/anaconda/2023.03-1/install/envs
                          /home/cic/devgab/.conda/envs
               platform : linux-64
             user-agent : conda/23.3.1 requests/2.28.1 CPython/3.10.12 Linux/6.5.7-x64v3-xanmod1 ubuntu/22.04.3 glibc/2.35
                UID:GID : 1111:1001
             netrc file : None
           offline mode : False

stringi.so Is missing on conda enviroments

Hello there!

I am having some issues with stringi when I try to get it run from a conda envirioment. This is the error I am currently getting:

processing file: final_filters2.Rmd
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object '/lustre/scratch117/cellgen/team218/gp7/miniconda/lib/R/library/stringi/libs/stringi.so':
  libicui18n.so.58: cannot open shared object file: No such file or directory
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
In addition: Warning messages:
1: In grDevices::png(tempfile()) :
  unable to load shared object '/lustre/scratch117/cellgen/team218/gp7/miniconda/lib/R/library/grDevices/libs//cairo.so':
  libicui18n.so.58: cannot open shared object file: No such file or directory
2: In grDevices::png(tempfile()) : failed to load cairo DLL
Execution halted

It seems that other people have had this issue before and it might have to do with the compiler call:
https://stackoverflow.com/questions/46735932/rstudio-how-to-get-stringi-package-installation-to-work-all-good-until-dyn-load

I would be very grateful if you can give me any ideas about how to solve this, as I would like to keep using this R-script (final_filters2.Rmd) string within a conda enviroment that run though SnakeMake.

Best,
Guillermo


Environment (conda list): 
channels:
  - conda-forge
  - bioconda
  - biobuilds
dependencies:
  - r-ggplot2
  - r-reshape2
  - r-stringr
  - r-mixtools
  - r-data.table
  - r-stringi
  - pandoc

Details about conda and system ( conda info ): 
     active environment : MicroExonator_R
    active env location : /lustre/scratch117/cellgen/team218/gp7/miniconda/envs/MicroExonator_R
            shell level : 2
       user config file : /nfs/users/nfs_g/gp7/.condarc
 populated config files : /nfs/users/nfs_g/gp7/.condarc
          conda version : 4.6.7
    conda-build version : not installed
         python version : 2.7.12.final.0
       base environment : /lustre/scratch117/cellgen/team218/gp7/miniconda  (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/free/linux-64
                          https://repo.anaconda.com/pkgs/free/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://conda.anaconda.org/cgat/linux-64
                          https://conda.anaconda.org/cgat/noarch
          package cache : /lustre/scratch117/cellgen/team218/gp7/miniconda/pkgs
                          /nfs/users/nfs_g/gp7/.conda/pkgs
       envs directories : /lustre/scratch117/cellgen/team218/gp7/miniconda/envs
                          /nfs/users/nfs_g/gp7/.conda/envs
               platform : linux-64
             user-agent : conda/4.6.7 requests/2.21.0 CPython/2.7.12 Linux/3.2.0-105-generic ubuntu/12.04.5 glibc/2.15
                UID:GID : 15375:1535
             netrc file : None
           offline mode : False

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