clojupyter / clojupyter Goto Github PK

19-03-04 16:46:26 gandalf INFO [clojupyter.misc.messages:101] - send-message sending:  {:name "stderr",
 :text
 "Syntax error compiling at (REPL:2:35).\nUnable to resolve symbol: word-cloud-spec-fromtext in this context\n"}
19-03-04 16:46:25 gandalf INFO [clojupyter.misc.messages:101] - send-message sending:  {:execution_count 14N,
 :code
 "(defn filtered-word-cloud [sentiment]\n    (oz.notebook.clojupyter/view! (word-cloud-spec-fromtext \n                                      (map #(:Phrase %) (take sample-size (filter #(= sentiment (:Sentiment %)) train))))))"}

19-03-04 16:46:26 xxx INFO [clojupyter.misc.messages:105] - send-message: message sent
19-03-04 16:46:26 xxxx INFO [clojupyter.misc.nrepl-comm:116] - nrepl status  ["eval-error"]
19-03-04 16:46:26 xxxxx INFO [clojupyter.misc.nrepl-comm:116] - nrepl status  nil
19-03-04 16:46:26 xxxx INFO [clojupyter.misc.messages:101] - send-message sending:  {:name "stderr",
 :text
 "Syntax error compiling at (REPL:2:35).\nUnable to resolve symbol: word-cloud-spec-fromtext in this context\n"}
19-03-04 16:46:26 xxxx INFO [clojupyter.misc.messages:105] - send-message: message sent
19-03-04 16:46:26 xxxx INFO [clojupyter.misc.nrepl-comm:116] - nrepl status  ["done"]
ERROR: Unhandled REPL handler exception processing message {:id a6fd369a-e6ca-4d4a-ba8c-e57b87d21c83, :op stacktrace, :session 05fa475a-7fba-4b6e-928a-e24382396020}
java.lang.NullPointerException
	at clojure.string$replace_first.invokeStatic(string.clj:165)
	at clojure.string$replace_first.invoke(string.clj:138)
	at cider.nrepl.middleware.stacktrace$relative_path.invokeStatic(stacktrace.clj:195)
	at cider.nrepl.middleware.stacktrace$relative_path.invoke(stacktrace.clj:189)
	at cider.nrepl.middleware.stacktrace$extract_location.invokeStatic(stacktrace.clj:209)

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Retrieving org/sonatype/sisu/sisu-guice/3.0.3/sisu-guice-3.0.3-no_aop.jar from central
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Retrieving org/apache/maven/maven-model-builder/3.0.4/maven-model-builder-3.0.4.jar from central
Retrieving org/apache/maven/maven-repository-metadata/3.0.4/maven-repository-metadata-3.0.4.jar from central
Retrieving org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar from central
Retrieving org/codehaus/plexus/plexus-utils/2.0.6/plexus-utils-2.0.6.jar from central
Retrieving org/tcrawley/dynapath/0.2.3/dynapath-0.2.3.jar from central
Retrieving org/apache/maven/wagon/wagon-provider-api/2.2/wagon-provider-api-2.2.jar from central
Retrieving org/apache/maven/wagon/wagon-http/2.2/wagon-http-2.2.jar from central
Retrieving org/apache/maven/wagon/wagon-http-shared4/2.2/wagon-http-shared4-2.2.jar from central
Retrieving org/jsoup/jsoup/1.6.1/jsoup-1.6.1.jar from central
Retrieving commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar from central
Retrieving commons-io/commons-io/2.0.1/commons-io-2.0.1.jar from central
Retrieving org/apache/httpcomponents/httpclient/4.1.2/httpclient-4.1.2.jar from central
Retrieving commons-codec/commons-codec/1.4/commons-codec-1.4.jar from central
Retrieving org/apache/httpcomponents/httpcore/4.1.2/httpcore-4.1.2.jar from central
Retrieving com/fasterxml/jackson/core/jackson-core/2.8.6/jackson-core-2.8.6.jar from central
Retrieving com/fasterxml/jackson/dataformat/jackson-dataformat-cbor/2.8.6/jackson-dataformat-cbor-2.8.6.jar from central
Retrieving com/fasterxml/jackson/dataformat/jackson-dataformat-smile/2.8.6/jackson-dataformat-smile-2.8.6.jar from central
Retrieving joda-time/joda-time/2.8.2/joda-time-2.8.2.jar from central
Retrieving org/clojure/core.rrb-vector/0.0.11/core.rrb-vector-0.0.11.jar from central
Retrieving org/clojure/math.combinatorics/0.0.4/math.combinatorics-0.0.4.jar from central
Retrieving net/sourceforge/jplasma/core-lapack/0.1/core-lapack-0.1.jar from central
Retrieving net/sourceforge/f2j/arpack_combined_all/0.1/arpack_combined_all-0.1.jar from central
Retrieving net/sourceforge/jplasma/jplasma/1.2.0/jplasma-1.2.0.jar from central
Retrieving net/sourceforge/jtransforms/jtransforms/2.4.0/jtransforms-2.4.0.jar from central
Retrieving net/sourceforge/parallelcolt/parallelcolt/0.10.1/parallelcolt-0.10.1.jar from central
Retrieving junit/junit/4.8.2/junit-4.8.2.jar from central
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Retrieving net/sourceforge/parallelcolt/optimization/1.0/optimization-1.0.jar from central
Retrieving com/googlecode/netlib-java/netlib-java/0.9.3/netlib-java-0.9.3.jar from central
Retrieving com/github/rwl/JKLU/1.0.0/JKLU-1.0.0.jar from central
Retrieving com/github/rwl/BTFJ/1.0.1/BTFJ-1.0.1.jar from central
Retrieving com/github/rwl/AMDJ/1.0.1/AMDJ-1.0.1.jar from central
Retrieving com/github/rwl/COLAMDJ/1.0.1/COLAMDJ-1.0.1.jar from central
Retrieving org/jblas/jblas/1.2.3/jblas-1.2.3.jar from central
Retrieving net/sf/opencsv/opencsv/2.3/opencsv-2.3.jar from central
Retrieving org/clojure/core.incubator/0.1.2/core.incubator-0.1.2.jar from central
Retrieving org/mongodb/mongo-java-driver/2.9.3/mongo-java-driver-2.9.3.jar from central
Retrieving com/lowagie/itext/2.1.7/itext-2.1.7.jar from central
Retrieving bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar from central
Retrieving bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar from central
Retrieving org/bouncycastle/bctsp-jdk14/1.38/bctsp-jdk14-1.38.jar from central
Retrieving org/bouncycastle/bcprov-jdk14/1.38/bcprov-jdk14-1.38.jar from central
Retrieving org/bouncycastle/bcmail-jdk14/1.38/bcmail-jdk14-1.38.jar from central
Retrieving org/apache/xmlgraphics/batik-css/1.7/batik-css-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-dom/1.7/batik-dom-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-ext/1.7/batik-ext-1.7.jar from central
Retrieving xalan/xalan/2.6.0/xalan-2.6.0.jar from central
Retrieving xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar from central
Retrieving xml-apis/xml-apis-ext/1.3.04/xml-apis-ext-1.3.04.jar from central
Retrieving org/apache/xmlgraphics/batik-svggen/1.7/batik-svggen-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-awt-util/1.7/batik-awt-util-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-util/1.7/batik-util-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-xml/1.7/batik-xml-1.7.jar from central
Retrieving org/scilab/forge/jlatexmath/0.9.6/jlatexmath-0.9.6.jar from central
Retrieving org/apache/poi/poi-ooxml/3.9/poi-ooxml-3.9.jar from central
Retrieving org/apache/poi/poi/3.9/poi-3.9.jar from central
Retrieving org/apache/poi/poi-ooxml-schemas/3.9/poi-ooxml-schemas-3.9.jar from central
Retrieving org/apache/xmlbeans/xmlbeans/2.3.0/xmlbeans-2.3.0.jar from central
Retrieving stax/stax-api/1.0.1/stax-api-1.0.1.jar from central
Retrieving dom4j/dom4j/1.6.1/dom4j-1.6.1.jar from central
Retrieving org/clojure/java.jdbc/0.2.3/java.jdbc-0.2.3.jar from central
Retrieving org/clojure/tools.analyzer.jvm/0.6.10/tools.analyzer.jvm-0.6.10.jar from central
Retrieving org/clojure/clojure/1.8.0/clojure-1.8.0.jar from central
Retrieving org/clojure/core.async/0.2.395/core.async-0.2.395.jar from central
Retrieving org/clojure/tools.analyzer/0.6.9/tools.analyzer-0.6.9.jar from central
Retrieving org/clojure/core.memoize/0.5.9/core.memoize-0.5.9.jar from central
Retrieving org/clojure/core.cache/0.6.5/core.cache-0.6.5.jar from central
Retrieving org/ow2/asm/asm-all/4.2/asm-all-4.2.jar from central
Retrieving org/clojure/data.priority-map/0.0.7/data.priority-map-0.0.7.jar from central
Retrieving org/clojure/tools.reader/1.0.0-beta2/tools.reader-1.0.0-beta2.jar from central
Retrieving org/clojure/data.codec/0.1.0/data.codec-0.1.0.jar from central
Retrieving org/clojure/data.json/0.2.6/data.json-0.2.6.jar from central
Retrieving org/clojure/tools.logging/0.3.1/tools.logging-0.3.1.jar from central
Retrieving org/clojure/tools.nrepl/0.2.12/tools.nrepl-0.2.12.jar from central
Retrieving org/zeromq/cljzmq/0.1.4/cljzmq-0.1.4.jar from central
Retrieving org/zeromq/jeromq/0.3.4/jeromq-0.3.4.jar from central
Retrieving org/bouncycastle/bcprov-jdk15on/1.52/bcprov-jdk15on-1.52.jar from central
Retrieving beckon/beckon/0.1.1/beckon-0.1.1.jar from clojars
Retrieving compliment/compliment/0.3.2/compliment-0.3.2.jar from clojars
Retrieving tigris/tigris/0.1.1/tigris-0.1.1.jar from clojars
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Retrieving cider/cider-nrepl/0.10.2/cider-nrepl-0.10.2.jar from clojars
Retrieving clj-time/clj-time/0.11.0/clj-time-0.11.0.jar from clojars
Retrieving fipp/fipp/0.6.4/fipp-0.6.4.jar from clojars
Retrieving incanter/incanter-core/1.5.7/incanter-core-1.5.7.jar from clojars
Retrieving incanter/incanter/1.5.7/incanter-1.5.7.jar from clojars
Retrieving clatrix/clatrix/0.3.0/clatrix-0.3.0.jar from clojars
Retrieving net/mikera/core.matrix/0.7.2/core.matrix-0.7.2.jar from clojars
Retrieving incanter/incanter-io/1.5.7/incanter-io-1.5.7.jar from clojars
Retrieving slingshot/slingshot/0.10.3/slingshot-0.10.3.jar from clojars
Retrieving org/danlarkin/clojure-json/1.1/clojure-json-1.1.jar from clojars
Retrieving incanter/incanter-charts/1.5.7/incanter-charts-1.5.7.jar from clojars
Retrieving incanter/incanter-mongodb/1.5.7/incanter-mongodb-1.5.7.jar from clojars
Retrieving congomongo/congomongo/0.3.3/congomongo-0.3.3.jar from clojars
Retrieving incanter/incanter-pdf/1.5.7/incanter-pdf-1.5.7.jar from clojars
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Retrieving incanter/incanter-latex/1.5.7/incanter-latex-1.5.7.jar from clojars
Retrieving incanter/incanter-excel/1.5.7/incanter-excel-1.5.7.jar from clojars
Retrieving incanter/incanter-sql/1.5.7/incanter-sql-1.5.7.jar from clojars
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Retrieving net/cgrand/parsley/0.9.2/parsley-0.9.2.jar from clojars
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Retrieving clj-tuple/clj-tuple/0.2.2/clj-tuple-0.2.2.jar from clojars
Compiling clojupyter.core
WARNING: cat already refers to: #'clojure.core/cat in namespace: net.cgrand.parsley.fold, being replaced by: #'net.cgrand.parsley.fold/cat
Compiling clojupyter.core
Created /home/jovyan/work/clojupyter-master/target/clojupyter-0.1.0-SNAPSHOT.jar
Created /home/jovyan/work/clojupyter-master/target/clojupyter-0.1.0-SNAPSHOT-standalone.jar
cat bin/clojupyter.template $(find . -maxdepth 2 -type f | grep -e ".*standalone.*\.jar") > bin/clojupyter
chmod +x bin/clojupyter
mkdir -p ~/.ipython/kernels/clojure
cp bin/clojupyter ~/.ipython/kernels/clojure/clojupyter
 ---> 74d5e2e5fdf3
Removing intermediate container d8dad9f15917
Step 9/9 : USER $NB_USER
 ---> Running in c8d965c62b43
 ---> f179d15e1076
Removing intermediate container c8d965c62b43
Successfully built f179d15e1076
docker build -t ici-recorder .^C
docker run --rm -p 8888:8888 -v (pwd):/home/jovyan/work ici-recorder
[I 20:09:12.682 NotebookApp] Writing notebook server cookie secret to /home/jovyan/.local/share/jupyter/runtime/notebook_cookie_secret
[W 20:09:13.327 NotebookApp] WARNING: The notebook server is listening on all IP addresses and not using encryption. This is not recommended.
[W 20:09:13.328 NotebookApp] WARNING: The notebook server is listening on all IP addresses and not using authentication. This is highly insecure and not recommended.
[I 20:09:13.346 NotebookApp] Serving notebooks from local directory: /home/jovyan/work
[I 20:09:13.347 NotebookApp] 0 active kernels
[I 20:09:13.347 NotebookApp] The Jupyter Notebook is running at: http://[all ip addresses on your system]:8888/
[I 20:09:13.347 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[I 20:09:16.951 NotebookApp] 302 GET / (172.17.0.1) 0.57ms
[I 20:09:25.019 NotebookApp] Creating new notebook in
[I 20:09:25.031 NotebookApp] Writing notebook-signing key to /home/jovyan/.local/share/jupyter/notebook_secret
[I 20:09:25.833 NotebookApp] Kernel started: 0a09203f-3932-4845-95ba-bf79662057ad
WARNING: cat already refers to: #'clojure.core/cat in namespace: net.cgrand.parsley.fold, being replaced by: #'net.cgrand.parsley.fold/cat
Feb 14, 2017 8:10:25 PM clojure.tools.logging$eval1$fn__6 invoke
SEVERE: Message type inspect_request not handled yet. Exiting.
Feb 14, 2017 8:10:25 PM clojure.tools.logging$eval1$fn__6 invoke
SEVERE: Message dump: {:idents (#object[[B 0x6654309 [B@6654309]), :delimiter <IDS|MSG>, :signature 5c32e8eabeaa795b6de2602854b1f2bbe8f16e8400ce6a18a6f5007f8f1cf399, :header {:version 5.0, :msg_type inspect_request, :username username, :session 91F2332DEAB54F5380F3889DAEF3792D, :msg_id FCFD1C5DC7F14E07839EAA72EFB03B07}, :parent-header {}, :content {:code (require), :cursor_pos 8, :detail_level 0}}
[I 20:10:25.830 NotebookApp] KernelRestarter: restarting kernel (1/5)
WARNING:root:kernel 0a09203f-3932-4845-95ba-bf79662057ad restarted
WARNING: cat already refers to: #'clojure.core/cat in namespace: net.cgrand.parsley.fold, being replaced by: #'net.cgrand.parsley.fold/cat
[I 20:10:31.044 NotebookApp] Saving file at /Untitled.ipynb
[I 20:10:36.288 NotebookApp] Saving file at /Untitled.ipynb
[I 20:10:40.467 NotebookApp] Kernel interrupted: 0a09203f-3932-4845-95ba-bf79662057ad
[I 20:10:46.758 NotebookApp] Kernel restarted: 0a09203f-3932-4845-95ba-bf79662057ad
WARNING: cat already refers to: #'clojure.core/cat in namespace: net.cgrand.parsley.fold, being replaced by: #'net.cgrand.parsley.fold/cat
[I 20:11:26.808 NotebookApp] Saving file at /Untitled.ipynb
[I 20:13:26.809 NotebookApp] Saving file at /Untitled.ipynb
[I 20:15:26.815 NotebookApp] Saving file at /Untitled.ipynb
[I 20:15:37.374 NotebookApp] Saving file at /Untitled.ipynb
[I 20:17:26.826 NotebookApp] Saving file at /Untitled.ipynb
[I 20:26:21.047 NotebookApp] Saving file at /src/ici/clojush.clj
[I 20:27:26.821 NotebookApp] Saving file at /Untitled.ipynb
[I 20:28:46.620 NotebookApp] Saving file at /Untitled.ipynb
[I 20:29:16.577 NotebookApp] Kernel started: d901688d-fc99-4404-90ef-6bd10175e7f1
WARNING: cat already refers to: #'clojure.core/cat in namespace: net.cgrand.parsley.fold, being replaced by: #'net.cgrand.parsley.fold/cat
[I 20:31:16.837 NotebookApp] Saving file at /src/ici/Untitled.ipynb
[W 20:31:26.811 NotebookApp] No such file or directory: Untitled.ipynb
[W 20:31:26.813 NotebookApp] 404 GET /api/contents/Untitled.ipynb?content=0&_=1487214494677 (172.17.0.1) 3.27ms referer=http://localhost:8888/notebooks/Untitled.ipynb?kernel_name=clojure
[I 20:31:26.835 NotebookApp] Uploading file to /Untitled.ipynb
[I 20:32:00.667 NotebookApp] Saving file at /Untitled.ipynb
[I 20:33:26.835 NotebookApp] Saving file at /Untitled.ipynb
^[[A[I 20:36:50.583 NotebookApp] Saving file at /Untitled.ipynb
^C[I 20:36:52.771 NotebookApp] Interrupted...
[I 20:36:52.771 NotebookApp] Shutting down kernels
[I 20:36:53.815 NotebookApp] Kernel shutdown: 0a09203f-3932-4845-95ba-bf79662057ad
[I 20:36:53.815 NotebookApp] Kernel shutdown: d901688d-fc99-4404-90ef-6bd10175e7f1
docker build -t ici-recorder .
Sending build context to Docker daemon 1.032 MB
Step 1/9 : FROM jupyter/datascience-notebook
 ---> 5ed2fa621e8e
Step 2/9 : USER root
 ---> Using cache
 ---> bfffa372a9cb
Step 3/9 : RUN echo 'deb http://cdn-fastly.deb.debian.org/debian jessie-backports main' > /etc/apt/sources.list.d/jessie-backports.list &&     apt-get -y update &&     apt-get install --no-install-recommends -t jessie-backports -y openjdk-8-jre-headless ca-certificates-java &&     rm /etc/apt/sources.list.d/jessie-backports.list &&     apt-get clean &&     rm -rf /var/lib/apt/lists/*
 ---> Using cache
 ---> c9acab7140f3
Step 4/9 : ENV PATH /home/jovyan/bin/:$PATH
 ---> Using cache
 ---> c88a1e162dc9
Step 5/9 : ADD https://raw.githubusercontent.com/technomancy/leiningen/stable/bin/lein /home/jovyan/bin/
Downloading 12.87 kB
 ---> Using cache
 ---> ceb25f1c7f91
Step 6/9 : RUN chmod +x /home/jovyan/bin/lein
 ---> Using cache
 ---> 2220d03b9494
Step 7/9 : ADD https://github.com/roryk/clojupyter/archive/master.zip clojupyter.zip
Downloading  61.8 kB
 ---> Using cache
 ---> 4cc1be26d061
Step 8/9 : RUN unzip clojupyter.zip && 		cd clojupyter-master && 		sed -i -- 's/clojure "1.8.0"/clojure "1.9.0-alpha14"/g' project.clj && 		make && 		make install
 ---> Running in e6510107bce2
Archive:  clojupyter.zip
80d287a659064db635bd7a9480968f7aa4c01347
   creating: clojupyter-master/
  inflating: clojupyter-master/.gitignore
  inflating: clojupyter-master/LICENSE.txt
  inflating: clojupyter-master/Makefile
  inflating: clojupyter-master/README.md
   creating: clojupyter-master/bin/
  inflating: clojupyter-master/bin/clojupyter.template
   creating: clojupyter-master/images/
  inflating: clojupyter-master/images/demo.png
  inflating: clojupyter-master/project.clj
   creating: clojupyter-master/resources/
  inflating: clojupyter-master/resources/connect.json
  inflating: clojupyter-master/resources/kernel.json
   creating: clojupyter-master/src/
   creating: clojupyter-master/src/clojupyter/
  inflating: clojupyter-master/src/clojupyter/core.clj
   creating: clojupyter-master/src/clojupyter/middleware/
  inflating: clojupyter-master/src/clojupyter/middleware/mime_values.clj
   creating: clojupyter-master/src/clojupyter/misc/
  inflating: clojupyter-master/src/clojupyter/misc/complete.clj
  inflating: clojupyter-master/src/clojupyter/misc/incanter.clj
   creating: clojupyter-master/src/clojupyter/protocol/
  inflating: clojupyter-master/src/clojupyter/protocol/mime_convertible.clj
   creating: clojupyter-master/test/
   creating: clojupyter-master/test/clojupyter/
  inflating: clojupyter-master/test/clojupyter/core_test.clj
lein uberjar
WARNING: You're currently running as root; probably by accident.
Press control-C to abort or Enter to continue as root.
Set LEIN_ROOT to disable this warning.
Downloading Leiningen to /home/jovyan/.lein/self-installs/leiningen-2.7.1-standalone.jar now...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   605    0   605    0     0   3663      0 --:--:-- --:--:-- --:--:--  3805
100 14.6M  100 14.6M    0     0  1505k      0  0:00:09  0:00:09 --:--:-- 1473k
Retrieving com/cemerick/pomegranate/0.3.0/pomegranate-0.3.0.pom from central
Retrieving org/clojure/pom.contrib/0.0.20/pom.contrib-0.0.20.pom from central
Retrieving org/sonatype/oss/oss-parent/5/oss-parent-5.pom from central
Retrieving org/sonatype/aether/aether-api/1.13.1/aether-api-1.13.1.pom from central
Retrieving org/sonatype/aether/aether/1.13.1/aether-1.13.1.pom from central
Retrieving org/sonatype/forge/forge-parent/10/forge-parent-10.pom from central
Retrieving org/sonatype/aether/aether-util/1.13.1/aether-util-1.13.1.pom from central
Retrieving org/sonatype/aether/aether-impl/1.13.1/aether-impl-1.13.1.pom from central
Retrieving org/sonatype/aether/aether-spi/1.13.1/aether-spi-1.13.1.pom from central
Retrieving org/sonatype/aether/aether-connector-file/1.13.1/aether-connector-file-1.13.1.pom from central
Retrieving org/sonatype/aether/aether-connector-wagon/1.13.1/aether-connector-wagon-1.13.1.pom from central
Retrieving org/apache/maven/wagon/wagon-provider-api/1.0-beta-6/wagon-provider-api-1.0-beta-6.pom from central
Retrieving org/apache/maven/wagon/wagon/1.0-beta-6/wagon-1.0-beta-6.pom from central
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Retrieving org/jblas/jblas/1.2.3/jblas-1.2.3.jar from central
Retrieving net/sf/opencsv/opencsv/2.3/opencsv-2.3.jar from central
Retrieving org/clojure/core.incubator/0.1.2/core.incubator-0.1.2.jar from central
Retrieving org/mongodb/mongo-java-driver/2.9.3/mongo-java-driver-2.9.3.jar from central
Retrieving com/lowagie/itext/2.1.7/itext-2.1.7.jar from central
Retrieving bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar from central
Retrieving bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar from central
Retrieving org/bouncycastle/bctsp-jdk14/1.38/bctsp-jdk14-1.38.jar from central
Retrieving org/bouncycastle/bcprov-jdk14/1.38/bcprov-jdk14-1.38.jar from central
Retrieving org/bouncycastle/bcmail-jdk14/1.38/bcmail-jdk14-1.38.jar from central
Retrieving org/apache/xmlgraphics/batik-dom/1.7/batik-dom-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-css/1.7/batik-css-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-ext/1.7/batik-ext-1.7.jar from central
Retrieving xalan/xalan/2.6.0/xalan-2.6.0.jar from central
Retrieving xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar from central
Retrieving xml-apis/xml-apis-ext/1.3.04/xml-apis-ext-1.3.04.jar from central
Retrieving org/apache/xmlgraphics/batik-svggen/1.7/batik-svggen-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-awt-util/1.7/batik-awt-util-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-util/1.7/batik-util-1.7.jar from central
Retrieving org/apache/xmlgraphics/batik-xml/1.7/batik-xml-1.7.jar from central
Retrieving org/apache/poi/poi-ooxml/3.9/poi-ooxml-3.9.jar from central
Retrieving org/scilab/forge/jlatexmath/0.9.6/jlatexmath-0.9.6.jar from central
Retrieving org/apache/poi/poi/3.9/poi-3.9.jar from central
Retrieving org/apache/poi/poi-ooxml-schemas/3.9/poi-ooxml-schemas-3.9.jar from central
Retrieving org/apache/xmlbeans/xmlbeans/2.3.0/xmlbeans-2.3.0.jar from central
Retrieving stax/stax-api/1.0.1/stax-api-1.0.1.jar from central
Retrieving dom4j/dom4j/1.6.1/dom4j-1.6.1.jar from central
Retrieving org/clojure/java.jdbc/0.2.3/java.jdbc-0.2.3.jar from central
Retrieving org/clojure/clojure/1.9.0-alpha14/clojure-1.9.0-alpha14.jar from central
Retrieving org/clojure/core.async/0.2.395/core.async-0.2.395.jar from central
Retrieving org/clojure/tools.analyzer.jvm/0.6.10/tools.analyzer.jvm-0.6.10.jar from central
Retrieving org/clojure/core.memoize/0.5.9/core.memoize-0.5.9.jar from central
Retrieving org/clojure/tools.analyzer/0.6.9/tools.analyzer-0.6.9.jar from central
Retrieving org/clojure/core.cache/0.6.5/core.cache-0.6.5.jar from central
Retrieving org/clojure/data.priority-map/0.0.7/data.priority-map-0.0.7.jar from central
Retrieving org/ow2/asm/asm-all/4.2/asm-all-4.2.jar from central
Retrieving org/clojure/tools.reader/1.0.0-beta2/tools.reader-1.0.0-beta2.jar from central
Retrieving org/clojure/data.codec/0.1.0/data.codec-0.1.0.jar from central
Retrieving org/clojure/data.json/0.2.6/data.json-0.2.6.jar from central
Retrieving org/clojure/tools.logging/0.3.1/tools.logging-0.3.1.jar from central
Retrieving org/clojure/tools.nrepl/0.2.12/tools.nrepl-0.2.12.jar from central
Retrieving org/zeromq/cljzmq/0.1.4/cljzmq-0.1.4.jar from central
Retrieving org/zeromq/jeromq/0.3.4/jeromq-0.3.4.jar from central
Retrieving org/bouncycastle/bcprov-jdk15on/1.52/bcprov-jdk15on-1.52.jar from central
Retrieving beckon/beckon/0.1.1/beckon-0.1.1.jar from clojars
Retrieving compliment/compliment/0.3.2/compliment-0.3.2.jar from clojars
Retrieving tigris/tigris/0.1.1/tigris-0.1.1.jar from clojars
Retrieving clj-time/clj-time/0.11.0/clj-time-0.11.0.jar from clojars
Retrieving cider/cider-nrepl/0.10.2/cider-nrepl-0.10.2.jar from clojars
Retrieving cheshire/cheshire/5.7.0/cheshire-5.7.0.jar from clojars
Retrieving fipp/fipp/0.6.4/fipp-0.6.4.jar from clojars
Retrieving incanter/incanter/1.5.7/incanter-1.5.7.jar from clojars
Retrieving incanter/incanter-core/1.5.7/incanter-core-1.5.7.jar from clojars
Retrieving clatrix/clatrix/0.3.0/clatrix-0.3.0.jar from clojars
Retrieving slingshot/slingshot/0.10.3/slingshot-0.10.3.jar from clojars
Retrieving net/mikera/core.matrix/0.7.2/core.matrix-0.7.2.jar from clojars
Retrieving org/danlarkin/clojure-json/1.1/clojure-json-1.1.jar from clojars
Retrieving incanter/incanter-io/1.5.7/incanter-io-1.5.7.jar from clojars
Retrieving incanter/incanter-charts/1.5.7/incanter-charts-1.5.7.jar from clojars
Retrieving incanter/incanter-mongodb/1.5.7/incanter-mongodb-1.5.7.jar from clojars
Retrieving incanter/incanter-pdf/1.5.7/incanter-pdf-1.5.7.jar from clojars
Retrieving congomongo/congomongo/0.3.3/congomongo-0.3.3.jar from clojars
Retrieving incanter/incanter-svg/1.5.7/incanter-svg-1.5.7.jar from clojars
Retrieving incanter/incanter-latex/1.5.7/incanter-latex-1.5.7.jar from clojars
Retrieving incanter/incanter-excel/1.5.7/incanter-excel-1.5.7.jar from clojars
Retrieving incanter/incanter-sql/1.5.7/incanter-sql-1.5.7.jar from clojars
Retrieving clojureql/clojureql/1.0.4/clojureql-1.0.4.jar from clojars
Retrieving incanter/incanter-zoo/1.5.7/incanter-zoo-1.5.7.jar from clojars
Retrieving incanter/jfreechart/1.0.13-no-gnujaxp/jfreechart-1.0.13-no-gnujaxp.jar from clojars
Retrieving incanter/jcommon/1.0.16/jcommon-1.0.16.jar from clojars
Retrieving mvxcvi/arrangement/1.0.0/arrangement-1.0.0.jar from clojars
Retrieving mvxcvi/puget/1.0.0/puget-1.0.0.jar from clojars
Retrieving net/cgrand/sjacket/0.1.1/sjacket-0.1.1.jar from clojars
Retrieving net/cgrand/regex/1.1.0/regex-1.1.0.jar from clojars
Retrieving net/cgrand/parsley/0.9.2/parsley-0.9.2.jar from clojars
Retrieving spyscope/spyscope/0.1.5/spyscope-0.1.5.jar from clojars
Retrieving potemkin/potemkin/0.4.1/potemkin-0.4.1.jar from clojars
Retrieving clj-tuple/clj-tuple/0.2.2/clj-tuple-0.2.2.jar from clojars
Retrieving riddley/riddley/0.1.10/riddley-0.1.10.jar from clojars
Retrieving pandect/pandect/0.5.4/pandect-0.5.4.jar from clojars
Compiling clojupyter.core
clojure.lang.ExceptionInfo: Call to clojure.core/ns did not conform to spec:
In: [2] val: ((require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt])) fails at: [:args] predicate: (cat :attr-map (? map?) :clauses :clojure.core.specs/ns-clauses),  Extra input
:clojure.spec/args  (spyscope.core "This co" (require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt]))
 #:clojure.spec{:problems [{:path [:args], :reason "Extra input", :pred (cat :attr-map (? map?) :clauses :clojure.core.specs/ns-clauses), :val ((require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt])), :via [], :in [2]}], :args (spyscope.core "This co" (require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt]))}, compiling:(core.clj:1:1)
Exception in thread "main" clojure.lang.ExceptionInfo: Call to clojure.core/ns did not conform to spec:
In: [2] val: ((require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt])) fails at: [:args] predicate: (cat :attr-map (? map?) :clauses :clojure.core.specs/ns-clauses),  Extra input
:clojure.spec/args  (spyscope.core "This co" (require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt]))
 #:clojure.spec{:problems [{:path [:args], :reason "Extra input", :pred (cat :attr-map (? map?) :clauses :clojure.core.specs/ns-clauses), :val ((require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt])), :via [], :in [2]}], :args (spyscope.core "This co" (require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt]))}, compiling:(core.clj:1:1)
	at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3657)
	at clojure.lang.Compiler.compile1(Compiler.java:7525)
	at clojure.lang.Compiler.compile1(Compiler.java:7515)
	at clojure.lang.Compiler.compile(Compiler.java:7592)
	at clojure.lang.RT.compile(RT.java:408)
	at clojure.lang.RT.load(RT.java:453)
	at clojure.lang.RT.load(RT.java:421)
	at clojure.core$load$fn__7846.invoke(core.clj:6008)
	at clojure.core$load.invokeStatic(core.clj:6007)
	at clojure.core$load.doInvoke(core.clj:5991)
	at clojure.lang.RestFn.invoke(RestFn.java:408)
	at clojure.core$load_one.invokeStatic(core.clj:5812)
	at clojure.core$compile$fn__7851.invoke(core.clj:6018)
	at clojure.core$compile.invokeStatic(core.clj:6018)
	at clojure.core$compile.invoke(core.clj:6010)
	at user$eval30$fn__39.invoke(form-init1281540755220289809.clj:1)
	at user$eval30.invokeStatic(form-init1281540755220289809.clj:1)
	at user$eval30.invoke(form-init1281540755220289809.clj:1)
	at clojure.lang.Compiler.eval(Compiler.java:6978)
	at clojure.lang.Compiler.eval(Compiler.java:6968)
	at clojure.lang.Compiler.eval(Compiler.java:6968)
	at clojure.lang.Compiler.load(Compiler.java:7430)
	at clojure.lang.Compiler.loadFile(Compiler.java:7368)
	at clojure.main$load_script.invokeStatic(main.clj:277)
	at clojure.main$init_opt.invokeStatic(main.clj:279)
	at clojure.main$init_opt.invoke(main.clj:279)
	at clojure.main$initialize.invokeStatic(main.clj:310)
	at clojure.main$null_opt.invokeStatic(main.clj:344)
	at clojure.main$null_opt.invoke(main.clj:341)
	at clojure.main$main.invokeStatic(main.clj:423)
	at clojure.main$main.doInvoke(main.clj:386)
	at clojure.lang.RestFn.applyTo(RestFn.java:137)
	at clojure.lang.Var.applyTo(Var.java:700)
	at clojure.main.main(main.java:37)
Caused by: clojure.lang.ExceptionInfo: Call to clojure.core/ns did not conform to spec:
In: [2] val: ((require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt])) fails at: [:args] predicate: (cat :attr-map (? map?) :clauses :clojure.core.specs/ns-clauses),  Extra input
:clojure.spec/args  (spyscope.core "This co" (require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt]))
 {:clojure.spec/problems [{:path [:args], :reason "Extra input", :pred (cat :attr-map (? map?) :clauses :clojure.core.specs/ns-clauses), :val ((require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt])), :via [], :in [2]}], :clojure.spec/args (spyscope.core "This co" (require [clojure.pprint :as pp] [clojure.string :as str] [clj-time.core :as time] [clj-time.format :as fmt]))}
	at clojure.core$ex_info.invokeStatic(core.clj:4725)
	at clojure.spec$macroexpand_check.invokeStatic(spec.clj:681)
	at clojure.spec$macroexpand_check.invoke(spec.clj:670)
	at clojure.lang.AFn.applyToHelper(AFn.java:156)
	at clojure.lang.AFn.applyTo(AFn.java:144)
	at clojure.lang.Var.applyTo(Var.java:700)
	at clojure.lang.Compiler.macroexpand1(Compiler.java:6816)
	at clojure.lang.Compiler.macroexpand(Compiler.java:6888)
	at clojure.lang.Compiler.compile1(Compiler.java:7510)
	at clojure.lang.Compiler.compile(Compiler.java:7592)
	at clojure.lang.RT.compile(RT.java:408)
	at clojure.lang.RT.load(RT.java:453)
	at clojure.lang.RT.load(RT.java:421)
	at clojure.core$load$fn__7846.invoke(core.clj:6008)
	at clojure.core$load.invokeStatic(core.clj:6007)
	at clojure.core$load.doInvoke(core.clj:5991)
	at clojure.lang.RestFn.invoke(RestFn.java:408)
	at clojure.core$load_one.invokeStatic(core.clj:5812)
	at clojure.core$load_one.invoke(core.clj:5807)
	at clojure.core$load_lib$fn__7791.invoke(core.clj:5852)
	at clojure.core$load_lib.invokeStatic(core.clj:5851)
	at clojure.core$load_lib.doInvoke(core.clj:5832)
	at clojure.lang.RestFn.applyTo(RestFn.java:142)
	at clojure.core$apply.invokeStatic(core.clj:659)
	at clojure.core$load_libs.invokeStatic(core.clj:5889)
	at clojure.core$load_libs.doInvoke(core.clj:5873)
	at clojure.lang.RestFn.applyTo(RestFn.java:137)
	at clojure.core$apply.invokeStatic(core.clj:659)
	at clojure.core$require.invokeStatic(core.clj:5911)
	at clojure.core$require.doInvoke(core.clj:5911)
	at clojure.lang.RestFn.invoke(RestFn.java:3204)
	at clojupyter.core$loading__7732__auto____46.invoke(core.clj:1)
	at clojure.lang.AFn.applyToHelper(AFn.java:152)
	at clojure.lang.AFn.applyTo(AFn.java:144)
	at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3652)
	... 33 more
Compilation failed: Subprocess failed
Makefile:2: recipe for target 'all' failed
make: *** [all] Error

c019020:clojupyter aidanrocke$ make
lein uberjar
make: lein: No such file or directory
make: *** [all] Error 1

lein uberjar
Compiling clojupyter.core
Compiling clojupyter.core
Created /home/patrick/clojupyter/target/clojupyter-0.1.0-SNAPSHOT.jar
Created /home/patrick/clojupyter/target/clojupyter-0.1.0-SNAPSHOT-standalone.jar
cat bin/clojupyter.template $(find . -maxdepth 2 -type f | grep -e ".*standalone.*\.jar") > bin/clojupyter
/bin/sh: 1: cannot create bin/clojupyter: Directory nonexistent
Makefile:2: recipe for target 'all' failed
make: *** [all] Error 2

conda create -n clojure jupyter notebook
source activate clojure
jupyter notebook

(clojure) drew.okane:clojure/ $ jupyter notebook                                                                                                                                                [14:44:13]
[I 14:44:22.643 NotebookApp] Serving notebooks from local directory: /Users/drew.okane/Documents/clojure
[I 14:44:22.643 NotebookApp] 0 active kernels
[I 14:44:22.643 NotebookApp] The Jupyter Notebook is running at: http://localhost:8888/
[I 14:44:22.643 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[I 14:44:27.060 NotebookApp] Kernel started: 015a4264-597c-426f-8bc0-c57d91c9b693
Input configuration: {:transport tcp, :hb_port 51379, :kernel_name clojure, :ip 127.0.0.1, :control_port 51378, :key f4b43054-c133-4ac6-97ba-0994d4b181d8, :stdin_port 51377, :signature_scheme hmac-sha256, :shell_port 51375, :iopub_port 51376}
Connecting heartbeat to tcp://127.0.0.1:51379
Connecting shell to tcp://127.0.0.1:51375
Connecting iopub to tcp://127.0.0.1:51376
[W 14:44:37.118 NotebookApp] Timeout waiting for kernel_info reply from 015a4264-597c-426f-8bc0-c57d91c9b693
Message type comm_info_request not handled yet. Exiting.
Message dump: {:idents (), :delimiter <IDS|MSG>, :signature 39558a8fece06e3acf630c34b95dc43382d027b6bbafc26a6cec1093ccab9bdf, :header {:username username, :version 5.0, :msg_id 363BC734ACF6448B99CDFEE78A9EE02F, :msg_type comm_info_request, :session 3DDAE79CB74D4844830E43625E889D51}, :parent-header {}, :content {:target_name jupyter.widget}}
[I 14:44:39.061 NotebookApp] KernelRestarter: restarting kernel (1/5)
WARNING:root:kernel 015a4264-597c-426f-8bc0-c57d91c9b693 restarted
Input configuration: {:transport tcp, :hb_port 51379, :kernel_name clojure, :ip 127.0.0.1, :control_port 51378, :key f4b43054-c133-4ac6-97ba-0994d4b181d8, :stdin_port 51377, :signature_scheme hmac-sha256, :shell_port 51375, :iopub_port 51376}
Connecting heartbeat to tcp://127.0.0.1:51379
Connecting shell to tcp://127.0.0.1:51375
Connecting iopub to tcp://127.0.0.1:51376

In  [1]: (map inc (range 10))
Out [1]: (1 2 3 4 5 6 7 8 9 10)

In  [1]: (map inc (range 10))
Out [1]: clojure.lang.LazySeq@c5d38b66

[I 14:30:13.986 NotebookApp] Creating new notebook in
[I 14:30:14.905 NotebookApp] Kernel started: 4df3e57a-d621-4335-b725-fa142d1558ed
Input configuration: {:transport tcp, :iopub_port 54345, :key 8a12fb29-3024-4d10-82ea-0d090064cb86, :signature_scheme hmac-sha256, :shell_port 54344, :stdin_port 54346, :control_port 54347, :hb_port 54348, :ip 127.0.0.1}
Connecting heartbeat to tcp://127.0.0.1:54348
Connecting shell to tcp://127.0.0.1:54344
Connecting iopub to tcp://127.0.0.1:54345
Exception in thread "main" java.lang.IllegalArgumentException: Value out of range for char: -116
    at clojure.lang.RT.charCast(RT.java:929)
    at clojure.core$char.invoke(core.clj:3157)
    at clojure.core$map$fn__4207.invoke(core.clj:2487)
    at clojure.lang.LazySeq.sval(LazySeq.java:42)
    at clojure.lang.LazySeq.seq(LazySeq.java:60)
    at clojure.lang.Cons.next(Cons.java:39)
    at clojure.lang.RT.boundedLength(RT.java:1654)
    at clojure.lang.RestFn.applyTo(RestFn.java:130)
    at clojure.core$apply.invoke(core.clj:617)
    at ipython_clojure.core$read_blob.invoke(core.clj:65)
    at ipython_clojure.core$read_until_delimiter$fn__1534.invoke(core.clj:71)
    at clojure.core$repeatedly$fn__4705.invoke(core.clj:4642)
    at clojure.lang.LazySeq.sval(LazySeq.java:42)
    at clojure.lang.LazySeq.seq(LazySeq.java:60)
    at clojure.lang.RT.seq(RT.java:484)
    at clojure.core$seq.invoke(core.clj:133)
    at clojure.core$take_while$fn__4236.invoke(core.clj:2564)
    at clojure.lang.LazySeq.sval(LazySeq.java:42)
    at clojure.lang.LazySeq.seq(LazySeq.java:60)
    at clojure.lang.RT.seq(RT.java:484)
    at clojure.core$seq.invoke(core.clj:133)
    at clojure.core$map$fn__4211.invoke(core.clj:2490)
    at clojure.lang.LazySeq.sval(LazySeq.java:42)
    at clojure.lang.LazySeq.seq(LazySeq.java:60)
    at clojure.lang.RT.seq(RT.java:484)
    at clojure.core$seq.invoke(core.clj:133)
    at clojure.core$dorun.invoke(core.clj:2780)
    at clojure.core$doall.invoke(core.clj:2796)
    at ipython_clojure.core$read_until_delimiter.invoke(core.clj:71)
    at ipython_clojure.core$read_raw_message.invoke(core.clj:120)
    at ipython_clojure.core$shell_loop.invoke(core.clj:224)
    at ipython_clojure.core$_main.doInvoke(core.clj:240)
    at clojure.lang.RestFn.applyTo(RestFn.java:137)
    at ipython_clojure.core.main(Unknown Source)
[W 14:30:25.008 NotebookApp] Timeout waiting for kernel_info reply from 4df3e57a-d621-4335-b725-fa142d1558ed

[com.amazonaws/aws-java-sdk "1.11.147"]

$ pushd && make && make install && pushd && jupyter-notebook
~/Documents/clojupyter ~/Documents ~
lein uberjar
Compiling clojupyter.core
Compiling clojupyter.core
Created /Users/bbeckman/Documents/clojupyter/target/clojupyter-0.1.0-SNAPSHOT.jar
Created /Users/bbeckman/Documents/clojupyter/target/clojupyter-0.1.0-SNAPSHOT-standalone.jar
cat bin/clojupyter.template $(find . -maxdepth 2 -type f | grep -e ".*standalone.*\.jar") > bin/clojupyter
chmod +x bin/clojupyter
mkdir -p ~/.ipython/kernels/clojure
cp bin/clojupyter ~/.ipython/kernels/clojure/clojupyter
~/Documents ~/Documents/clojupyter ~
[W 13:26:13.576 NotebookApp] server_extensions is deprecated, use nbserver_extensions
[I 13:26:13.991 NotebookApp] [jupyter_nbextensions_configurator] enabled 0.2.5
[I 13:26:13.996 NotebookApp] Serving notebooks from local directory: /Users/bbeckman/Documents
[I 13:26:13.996 NotebookApp] 0 active kernels 
[I 13:26:13.996 NotebookApp] The Jupyter Notebook is running at: http://localhost:8888/?token=a8bc42cf2609dfed1d12f9a32a1b23961dab47532123489e
[I 13:26:13.996 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[C 13:26:13.997 NotebookApp] 
    
    Copy/paste this URL into your browser when you connect for the first time,
    to login with a token:
        http://localhost:8888/?token=a8bc42cf2609dfed1d12f9a32a1b23961dab47532123489e
[I 13:26:14.304 NotebookApp] Accepting one-time-token-authenticated connection from ::1
[I 13:26:31.632 NotebookApp] Kernel started: 558d1e54-7207-4b28-973d-b552e5de4de5
Error: Invalid or corrupt jarfile /Users/bbeckman/.ipython/kernels/clojure/clojupyter

(require '[clojupyter.misc.helper :as helper])

​

(helper/add-dependencies '[org.clojure/data.json "0.2.6"])

(require '[clojure.data.json :as json])

            RT.java:   456 clojure.lang.RT/load                                   
           core.clj:  5893 clojure.core$load$fn__5677/invoke                      
           core.clj:  5892 clojure.core$load/invokeStatic                         
           core.clj:  5876 clojure.core$load/doInvoke                             
        RestFn.java:   408 clojure.lang.RestFn/invoke                             
           core.clj:  5697 clojure.core$load_one/invokeStatic                     
           core.clj:  5692 clojure.core$load_one/invoke                           
           core.clj:  5737 clojure.core$load_lib$fn__5626/invoke                  
           core.clj:  5736 clojure.core$load_lib/invokeStatic                     
           core.clj:  5717 clojure.core$load_lib/doInvoke                         
        RestFn.java:   142 clojure.lang.RestFn/applyTo                            
           core.clj:   648 clojure.core$apply/invokeStatic                        
           core.clj:  5774 clojure.core$load_libs/invokeStatic                    
           core.clj:  5758 clojure.core$load_libs/doInvoke                        
        RestFn.java:   137 clojure.lang.RestFn/applyTo                            
           core.clj:   648 clojure.core$apply/invokeStatic                        
           core.clj:  5796 clojure.core$require/invokeStatic                      
        RestFn.java:   408 clojure.lang.RestFn/invoke                             
                 []:     2 user$eval6295/invokeStatic                             
           core.clj:  3105 clojure.core$eval/invokeStatic                         
           core.clj:  3101 clojure.core$eval/invoke                               
           main.clj:   240 clojure.main$repl$read_eval_print__7408$fn__7411/invoke
           main.clj:   258 clojure.main$repl$fn__7417/invoke                      
           main.clj:   174 clojure.main$repl/doInvoke                             
        RestFn.java:  1523 clojure.lang.RestFn/invoke                             
           AFn.java:   152 clojure.lang.AFn/applyToHelper                         
           AFn.java:   144 clojure.lang.AFn/applyTo                               
           core.clj:   646 clojure.core$apply/invokeStatic                        
           core.clj:  1881 clojure.core$with_bindings_STAR_/invokeStatic          
        RestFn.java:   425 clojure.lang.RestFn/invoke                             
           AFn.java:    22 clojure.lang.AFn/run                                   

java.lang.ClassNotFoundException: clojure.core.async.Mutex

;; WARNING: DISABLES TLS ENCRYPTION; INSECURE !!!
(require 'cemerick.pomegranate.aether)
(cemerick.pomegranate.aether/register-wagon-factory!
 "http" #(org.apache.maven.wagon.providers.http.HttpWagon.))
(helper/add-dependencies '[org.clojure/data.json "0.2.6"])

FROM continuumio/anaconda3:latest

ENV LEIN_ROOT=1

# Install prerequisites
RUN apt-get update && apt-get install -y gcc default-jre make vim tmux 
RUN conda install -y -c r r-essentials r-rjava
RUN conda install -y -c conda-forge jupyterhub=0.7.2

# clojure
RUN wget https://raw.githubusercontent.com/technomancy/leiningen/stable/bin/lein -O /usr/bin/lein && chmod +x /usr/bin/lein
RUN lein self-install

RUN git clone https://github.com/roryk/clojupyter

WORKDIR clojupyter
RUN make && make install
WORKDIR /

RUN useradd --create-home --shell /bin/bash admin
RUN echo "1234\n1234"  | passwd admin

In [12]: (println "string")
Out[12]: nil

(+ 1 2)
(+ 2 3)
3 5

[I 23:52:13.641 NotebookApp] Creating new notebook in
[I 23:52:14.824 NotebookApp] Kernel started: 953b593d-ce73-4c77-b3f9-b3c7b5e287b2
Input configuration: {:transport tcp, :iopub_port 62456, :key 2dde9a9a-140e-4bc9-b82a-1021e6697943, :signature_scheme hmac-sha256, :shell_port 62455, :stdin_port 62457, :control_port 62458, :hb_port 62459, :ip 127.0.0.1}
Connecting heartbeat to tcp://127.0.0.1:62459
Connecting shell to tcp://127.0.0.1:62455
Connecting iopub to tcp://127.0.0.1:62456
Exception in thread "main" org.zeromq.ZMQException: Errno 65 :
    at org.zeromq.ZMQ$Socket.mayRaise(ZMQ.java:1344)
    at org.zeromq.ZMQ$Socket.send(ZMQ.java:1209)
    at zeromq.zmq$send.invoke(zmq.clj:159)
    at ipython_clojure.core$send_message_piece.invoke(core.clj:48)
    at ipython_clojure.core$kernel_info_reply.invoke(core.clj:86)
    at ipython_clojure.core$configure_shell_handler$fn__1603.invoke(core.clj:298)
    at ipython_clojure.core$shell_loop.invoke(core.clj:332)
    at ipython_clojure.core$_main.doInvoke(core.clj:346)
    at clojure.lang.RestFn.applyTo(RestFn.java:137)
    at ipython_clojure.core.main(Unknown Source)
[W 23:52:24.894 NotebookApp] Timeout waiting for kernel_info reply from 953b593d-ce73-4c77-b3f9-b3c7b5e287b2

bbss
So I seem to be hitting this error too, `No reader function for tag Inf`. 
If I look in the `lein deps :tree` I don't see any other dependency that requires it [it = tools.reader]. 
Will AOT dependencies show up there?
I guess this is suspect:
`[ring/ring-core "1.6.1" :exclusions [[org.clojure/tools.reader] [org.clojure/clojure]]]`
bhauman
AOT compiled classes are like a ghost in this case. (edited)
You do need to make sure that the tools.reader in the tree is at least 1.1.0
bbss
Removing the dependency that had that exclusion seems to not give that error and make the `lein figwheel` process crash so that's good!
Yeah, it was! So I guess we found the culprit.
bhauman
which dep was it?
bbss
`[org.clojars.didiercrunch/clojupyter "0.1.3"]`
I'll see if I can fix it by building locally later, and PR.
bhauman
https://github.com/clojupyter/clojupyter/blob/master/project.clj#L25 (edited)
that isn't needed I don't think perhaps file an issue
we should compile a list of the offenders
they could also just bump their tools.reader if they need the AOT