chrisruis / bammix Goto Github PK
View Code? Open in Web Editor NEWSummarise nucleotide counts at a set of positions in a BAM file to search for mixtures
License: GNU General Public License v3.0
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wook2014bammix's Issues
Nanopore bam files
Hello! Thanks for providing this awesome tool!
I'm presently working on samples done on different technologies, i.e. Illumina based or Nanopore based. The samples processed with Illumina and standard pipelines are working well with your tool. However, the ones processed with pretty basic Nanopore pipeline are not giving any result. I tried to add the RG tag in the bam file, but it's still not working.
Any idea what could happen here?
Thanks a lot for your help!
Jean-Christophe
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