Comments (4)
jchodera
commented on June 12, 2024
1
For inputs, what about taking some inspiration from the assaytools example and storing information like the ligand stock IDs and which rows of the plate you're considering?
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sonyahanson
commented on June 12, 2024
This is currently implemented using json files in quickmodel.py using a pre-defined inputs.py in the same directory. I think this is working nicely, but up for other suggestions on how to make this better or what to make sure to include.
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jchodera
commented on June 12, 2024
Do we really want to store this as a CSV file? Why not just pickle the results?
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jchodera
commented on June 12, 2024
Oh! Just saw the original post was from June, and that you're using JSON files now. Cool!
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Related Issues (20)
- Could we just set a slightly more restrictive prior on F_PL? HOT 1
- Missing dependencies HOT 4
- Cut a new assaytools release HOT 2
- Fix win install HOT 1
- Make better error message when using wrong path in quickmodel inputs file.
- Travis build failing - libgfortran related? HOT 5
- Deprecate assaytools-dev package HOT 3
- Travis is still broken HOT 1
- Clean up old branches
- Make Docs clearer for General Binding Model
- Integrate scripts/ into installed codebase and use entry-points instead
- Analysis for the single-well titration experiment HOT 2
- getting error in assaytools parser.py when running quickmodel HOT 9
- xml2png python 3.6 travis tests are failing HOT 1
- security alert for pyyaml dependency HOT 2
- Adding Quickmodel script the option to use informed F_PL priors HOT 1
- New release? HOT 1
- Add new `GeneralBindingModel` API that accepts/returns concentrations instead of log concentrations
- Getting print out of 'Skipping analysis of rows: []' for each protein from parser.py when running quickmodel HOT 3
- how to omit a well from analysis?
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