Comments (4)
@sonyahanson @jchodera Do you have any reservations about this change?
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These packages are not all pip
-installable. If you uncomment them, you will no longer be able to install assaytools via python setup.py install
because it will try (and fail) to install them by pip if you do not have them already installed.
We do have these listed in the conda package requirements, which is why we recommend people install this tool via conda. We haven't cut a release in quite some time, however.
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@jchodera Thanks for explaining why those are commented out.
Do your recommend installing through conda and uninstalling to just get dependencies, and then installing assaytools from repository via python setup.py install
?
When I tried conda installing assaytools with conda, it gives an error about Python 3.5 incompatibility.
$ conda install assaytools
Fetching package metadata .............
Solving package specifications: .
UnsatisfiableError: The following specifications were found to be in conflict:
- assaytools -> python 2.7*
- python 3.5*
Use "conda info <package>" to see the dependencies for each package.
I think we must update the conda release, so that it at least works with Python 3.5.
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Do your recommend installing through conda and uninstalling to just get dependencies, and then installing assaytools from repository via python setup.py install ?
Yes!
When I tried conda installing assaytools with conda, it gives an error about Python 3.5 incompatibility.
It looks like we haven't cut a new release since Python 3.5 was added. Let's create a new assaytools release.
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Related Issues (20)
- Could we just set a slightly more restrictive prior on F_PL? HOT 1
- Cut a new assaytools release HOT 2
- Fix win install HOT 1
- Make better error message when using wrong path in quickmodel inputs file.
- Travis build failing - libgfortran related? HOT 5
- Deprecate assaytools-dev package HOT 3
- Travis is still broken HOT 1
- Clean up old branches
- Make Docs clearer for General Binding Model
- Integrate scripts/ into installed codebase and use entry-points instead
- Analysis for the single-well titration experiment HOT 2
- getting error in assaytools parser.py when running quickmodel HOT 9
- xml2png python 3.6 travis tests are failing HOT 1
- security alert for pyyaml dependency HOT 2
- Adding Quickmodel script the option to use informed F_PL priors HOT 1
- New release? HOT 1
- Add new `GeneralBindingModel` API that accepts/returns concentrations instead of log concentrations
- Getting print out of 'Skipping analysis of rows: []' for each protein from parser.py when running quickmodel HOT 3
- how to omit a well from analysis?
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