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sonyahanson's Projects

assaytools icon assaytools

Python tools for the modeling and Bayesian analysis of fluorescence assays

ensembler icon ensembler

Software pipeline for automating omics-scale protein modeling and simulation setup.

fluorescence-plotting-notebooks icon fluorescence-plotting-notebooks

This is kind of a scratch repository for things that don't quite fit in 'assaytools' or 'fluorescence-assay-manuscript' in choderalab.

kinalysis icon kinalysis

Scripts for analyzing simulations of kinases!

mdtraj icon mdtraj

A modern, open library for the analysis of molecular dynamics trajectories

octomore icon octomore

finding eight or more parameters we can try for applying openpathsampling to kinases

sonyahanson.github.io icon sonyahanson.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

tensorflow icon tensorflow

Computation using data flow graphs for scalable machine learning

uniprotenator icon uniprotenator

Small python script to download all pdb's related to a single uniprot accession number and view in pymol.

yank icon yank

GPU-accelerated calculation of ligand binding affinities in implicit and explicit solvent using alchemical free energy methodologies

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