grpcio dependency: No such file or directory: 'cc' about checkm2 HOT 4 CLOSED

FROM mambaorg/micromamba:1.1.0

USER root
RUN apt-get update && \
    apt-get install -y build-essential git && \
    apt-get clean && \
    apt-get purge && \
    rm -rf /var/lib/apt/lists/* /tmp/*

USER $MAMBA_USER
ARG MAMBA_DOCKERFILE_ACTIVATE=1
COPY --chown=$MAMBA_USER:$MAMBA_USER env.yaml /tmp/env.yaml
RUN micromamba install -y -n base -f /tmp/env.yaml && \
    micromamba clean --all --yes

RUN git clone --recursive https://github.com/chklovski/checkm2.git && \
    cd checkm2 && \
    python setup.py install && \
    cd .. && rm -rf checkm2

ENTRYPOINT ["/usr/local/bin/_entrypoint.sh", "checkm2", "-h"]

name: CheckM2

on: [push, pull_request]

jobs:
  build:
    name: build (${{ matrix.python-version }}, ${{ matrix.os }})
    runs-on: ubuntu-latest
    env:
      DATADIR: data
    strategy:
      matrix:
        python-version: [3.9]
        build_type: [Release]
        compiler: [g++-9]
        include:
          - compiler: g++-9
    steps:
    - name: Checkout repository
      uses: actions/checkout@v2
    - name: Checkout submodules
      run: git submodule update --init --recursive
    - uses: conda-incubator/setup-miniconda@v2
      with:
        miniconda-version: 'latest'
        auto-update-conda: true
        mamba-version: "*"
        python-version: ${{ matrix.python-version }}
        channels: conda-forge,bioconda
        environment-file: checkm2.yml
        activate-environment: checkm2
    - name: package install
        shell: bash -l {0}
        working-directory: ${{runner.workspace}}/checkm2/
        run: |
          python setup.py install
    - name: checkm2 unit tests
        shell: bash -l {0}
        working-directory: ${{runner.workspace}}/checkm2/tests
        run: |
          pytest [checkm unit tests]
    - name: checkm2 CLI tests
        shell: bash -l {0}
        working-directory: ${{runner.workspace}}/checkm2/tests
        run: |
          checkm2 -h
          checkm2 predict -h