Comments (3)
yexianingyue
commented on August 24, 2024
Interestingly, although it indicated that prodigal could not be found, a portion of the proteins was successfully predicted, and then the program froze.
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chklovski
commented on August 24, 2024
Hi,
Does checkm2 testrun complete successfully? Was this installed via conda? It sounds like perhaps file permission issues might be playing a role, but it's hard to say with such generic errors.
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chklovski
commented on August 24, 2024
Please feel free to reopen if you have further information or error persists.
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Related Issues (20)
- Question about Checkm2 Annotation HOT 1
- Checkm2 flags certain species and genera as contaminated on a consistent basis.
- the version checkm2 v1.0.2 was not available on conda HOT 1
- Error in DIAMOND execution HOT 2
- [Feature Request] Use #!/usr/bin/env python instead of hardcoding python path
- AttributeError: 'Predictor' object has no attribute '__set_up_prodigal_thread' HOT 2
- Database update? HOT 2
- TypeError: metaclass conflict HOT 7
- coding density
- Can Checkm2 be fine-tuned for euMAGs? HOT 1
- Got different results of the same genome from the different runs of checkm2 HOT 3
- testrun error: AttributeError: module '__main__' has no attribute '__spec__'
- Testrun ERROR: No DIAMOND annotation was generated. HOT 2
- test run yields different results HOT 1
- Database download failed HOT 3
- Naming Output TSV File HOT 1
- TypeError: split() error
- AF_UNIX path too long HOT 2
- UnicodeEncodeError when running testrun and on real data. HOT 1
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