Comments (3)
Interestingly, although it indicated that prodigal
could not be found, a portion of the proteins was successfully predicted, and then the program froze.
from checkm2.
Hi,
Does checkm2 testrun complete successfully? Was this installed via conda? It sounds like perhaps file permission issues might be playing a role, but it's hard to say with such generic errors.
from checkm2.
Please feel free to reopen if you have further information or error persists.
from checkm2.
Related Issues (20)
- Question about Checkm2 Annotation HOT 1
- Checkm2 flags certain species and genera as contaminated on a consistent basis.
- the version checkm2 v1.0.2 was not available on conda HOT 1
- Error in DIAMOND execution HOT 2
- [Feature Request] Use #!/usr/bin/env python instead of hardcoding python path
- AttributeError: 'Predictor' object has no attribute '__set_up_prodigal_thread' HOT 2
- Database update? HOT 2
- TypeError: metaclass conflict HOT 7
- coding density
- Can Checkm2 be fine-tuned for euMAGs? HOT 1
- Got different results of the same genome from the different runs of checkm2 HOT 3
- testrun error: AttributeError: module '__main__' has no attribute '__spec__'
- Testrun ERROR: No DIAMOND annotation was generated. HOT 2
- test run yields different results HOT 1
- Database download failed HOT 3
- Naming Output TSV File HOT 1
- TypeError: split() error
- AF_UNIX path too long HOT 2
- UnicodeEncodeError when running testrun and on real data. HOT 1
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