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single cell and bulk RNASeq analysis scripts
Dear cemalley,
Thank you for your nice example of using FateID.
I am a beginner in the siRNA-seq analysis.
I have done the clustering and the identification of cell-types in my scRNA-seq datasets using Seurat v3.
I plan to use FateID to do the downstream analysis, but I have no idea how to convert the Seurat object into the data format that could be used in FateID.
Could you please teach me how to do the data format conversion from Seurat object, since I noticed that you are also using Seurat package.
Thank you in advance.
Thank you for your perfect example in using moncle.
I am a student who is going to perform pseudo-time analysis on single-cell data by moncle. I am confused that the database can only be downloaded to the expression matrix, phenoData and featureData files need to be created and written by ourselves?
I will appreciate it if you can provide your documentation (Aggregation6.csv) for my reference.
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