keypointmoseq's People
keypointmoseq's Issues
much slower s/it when run from CLI
Thanks for creating and sharing this codebase. I noticed a big difference in how both data loading and fitting it/s or s/it when I call load_data
or fit_model
from the command line as opposed to within a jupyter notebook. Could this be related to tdqm
printing progress to stdout vs. in the notebook?
(Also please let me know if there is a different forum to raise issues or discuss bug fixes) - SR
fitting sLDS crashes on Windows
I'm trying to run the keypoint_moseq pipeline on some of my tracking data on a windows machine with a GPU. See below for specs:
Jax: 0.4.1
TensorFlow: 2.8.4
Numpy: 1.22.4
Python: 3.8.15
OS: Windows-10-10.0.19044-SP0
I've confirmed that jax
sees my GPU.
I'm able to fit PCA, initialize and fit the AR-HMM but when I try to fit the SLDS my program crashes with no errors. I've tried running within a jupyter notebook and this step kills the kernel. I've tried running from the command line - same thing, the process just exists.
Any clues on how to troubleshoot this?
including `"tail"` in `use_bodyparts` causes error
apply_model is either very slow or hangs
deprecate?
you might want to make a big ol note that this repo is deprecated in favor of the new one!
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.