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License: GNU General Public License v2.0
Registration of Galaxy Tools in Elixir
License: GNU General Public License v2.0
I do not know if these should be modeled as distinct outputs or one output with multiple possible formats.
The current version of bioblend used by ReGaTE is a fork in fmareuil. We should merge asap with main.
This step skips the tools which do not come from a toolshed:
if not i['id'].find("galaxy.web.pasteur.fr") or not i['id'].find("toolshed"):
This is by design, but then we need a way to make this a choice or an option.
unless you are in the directory that contains it.
The remag
script is described before regate
, and it is not clear wether it is required or not. We should make it clear that it is not required, it is just a step to update the mapping.
This may become an option of regate.
"contact": [
{
"contactEmail": "[email protected]",
"contactName": "Institut Pasteur galaxy team"
}
]
Now, this might be a consequence of skipping the test mentioned in issue #3, but this:
string.split(tool_id, '/')[-2]
This crashes unless there is a specific format for names (toolshed id?). My temporary hack is:
try:
source = string.split(tool_id, '/')[-2]
except:
source = tool_id
return source
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