Comments (4)
vlad0x00
commented on June 14, 2024
I'd recommend removing btllib altogether from the source tree and just listing it as a dependency. That's what goldrush-edit does.
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lcoombe
commented on June 14, 2024
Yes for sure, I think that's the plan @vlad0x00 ! Johnathan started doing some tests related to that a couple of weeks ago but found that GR-Path was much slower with the newest btllib... So that's something that we'll need to look into
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vlad0x00
commented on June 14, 2024
Yeah @jowong4 told me that he thinks it has to do with the Bloom filter? Which is weird because nothing substantial has changed there. @jowong4 , are you sure it's the regular Bloom filter that slowed things down?
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lcoombe
commented on June 14, 2024
Completed in #106
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Related Issues (20)
- Dependencies not found with conda environment. HOT 3
- Filename should not contain . HOT 10
- miller required for goldrush_test_demo.sh HOT 2
- tmpdir/shared_dir pass through from parent goldrush? HOT 2
- terminate called after throwing an instance of 'std::system_error' HOT 23
- Add `ulimit -u` command in driver makefile HOT 1
- core dump in goldrush-edit HOT 7
- zsh & pipefail HOT 7
- Combine silver path and golden path generation in one step
- optimize parameters for large genome HOT 6
- Using existing Draft Assembly in place of Gold Path Input HOT 3
- large number of 1bp or small contigs HOT 4
- Goldrush for PacBio or ONT + PacBio HOT 3
- ONT read lengths mostly under 10 kb HOT 2
- goldrush for generating UMI consensus? HOT 6
- Debian Installation issues - memory free issue on test dataset HOT 9
- Error when running goldrush_test_demo HOT 3
- Question about warning and output HOT 3
- bc unknown command HOT 4
- Error while running HiFi reads whose mean length is 10k bp HOT 5
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