$ python FindSubcomponents.py -g ./test.dot -m
Warning: syntax error in line 2 near ''
Traceback (most recent call last):
File "/home/kmnip/programs/chopstitch/ChopStitch/FindSubcomponents.py", line 120, in <module>
main()
File "/home/kmnip/programs/chopstitch/ChopStitch/FindSubcomponents.py", line 108, in main
cc_subgraph = obj.findcc()
File "/home/kmnip/programs/chopstitch/ChopStitch/FindSubcomponents.py", line 24, in findcc
G = nx.drawing.nx_agraph.read_dot(self.dotfile)
File "/home/kmnip/lib/python2.7/site-packages/networkx/drawing/nx_agraph.py", line 197, in read_dot
A=pygraphviz.AGraph(file=path)
File "/home/kmnip/lib/python2.7/site-packages/pygraphviz/agraph.py", line 158, in __init__
self.read(filename)
File "/home/kmnip/lib/python2.7/site-packages/pygraphviz/agraph.py", line 1228, in read
raise DotError("Invalid Input")
pygraphviz.agraph.DotError: Invalid Input
digraph graphname {
"ENST00000474716.5_364_482" -> 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