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2016-summer-workshop

ISCB DC Area Regional Student Group - Summer 2016 Workshop

211

324324

500lineorless_cn

500 line or less 中文翻译计划。

500lines

500 Lines or Less

adage

This is the repository for ADAGE (Analysis using Denoising Autoencoders for Gene Expression)

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

atac-pipe

Analysis pipeline for ATAC-seq Data

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bam-to-junction-bed

Uses SAMTools, Python 2.7 and PySam to extract either junctions or exon read counts for known and novel junctions and exons. Requires an indexed BAM file with genomic coordinates

baxter_fits_microbiome_2016

bic-rnaseq

Internal portable version of BIC RNAseq pipeline; uses Bpipe

bioconda-recipes

Conda recipes for the bioconda channel.

biogui

An open sourced graphical interface for biological and bioinformatics applications written in python

bioinformatics

Trends in Bioinformatics

bioinformatics-training

Bioinformatics training resources

biopython

Official git repository for Biopython (converted from CVS)

biotk

Bioinformatics toolkit for handling large matrices, expression analysis, and more -- CLI plus C++ and Python libraries

biotk-1

Python toolkit for differential expression, text mining, and genomic interval analysis

blog

CSS魔法 - 博客

blogdown

Create Blogs and Websites with R Markdown

bnglmodels

Models written in BNGL, the BioNetGen modelling language.

bookdown-demo

A minimal book example using bookdown

bowtie2

A fast and sensitive gapped read aligner

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

brie

BRIE: Bayesian Regression for Isoform Estimate

centos5-vm

Instructions on how to deploy CentOS 5 virtual machines