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cwt1's Projects

cgat icon cgat

CGAT - Computational Genomics Analysis Tools

cheatsheets-ai icon cheatsheets-ai

Essential Cheat Sheets for deep learning and machine learning researchers

chipseqqc icon chipseqqc

Automated analysis and interactive reporting for ChIP seq data.

circexplorer icon circexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circfinder icon circfinder

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)

circlncrnanet icon circlncrnanet

An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs

cnci icon cnci

Coding-Non-Coding Index (CNCI)

cogena icon cogena

co-expressed gene-set enrichment analysis

cogent icon cogent

Coding Genome Reconstruction using Iso-Seq data

conda icon conda

OS-agnostic, system-level binary package manager and ecosystem

corset icon corset

Software for clustering de novo assembled transcripts and counting overlapping reads

corset-tools icon corset-tools

Companion scripts for annotation of Corset generated transcript clusters.

courses icon courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

desman icon desman

De novo Extraction of Strains from MetAgeNomes

diamond icon diamond

Accelerated BLAST compatible local sequence aligner.

dnet icon dnet

An open-source R package for omics data integrative analysis in terms of network, evolution and ontology

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