baoxingsong / msa2pi Goto Github PK
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License: MIT License
caculate pi value from multiple sequence alignment fasta file
License: MIT License
Hello, I've been trying to install this program but I am running into this error when I run 'ant':
`ant
Buildfile: /home/lp364/software/MSA2pi/build.xml
build-subprojects:
init:
build-project:
[echo] Msa2pi: /home/lp364/software/MSA2pi/build.xml
[javac] Compiling 6 source files to /home/lp364/software/MSA2pi/bin
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:1: error: package org.apache.commons.cli does not exist
[javac] import org.apache.commons.cli.CommandLine;
[javac] ^
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:2: error: package org.apache.commons.cli does not exist
[javac] import org.apache.commons.cli.CommandLineParser;
[javac] ^
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:3: error: package org.apache.commons.cli does not exist
[javac] import org.apache.commons.cli.Options;
[javac] ^
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:4: error: package org.apache.commons.cli does not exist
[javac] import org.apache.commons.cli.ParseException;
[javac] ^
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:5: error: package org.apache.commons.cli does not exist
[javac] import org.apache.commons.cli.PosixParser;
[javac] ^
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:21: error: cannot find symbol
[javac] Options options = new Options();
[javac] ^
[javac] symbol: class Options
[javac] location: class Msa2pi
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:21: error: cannot find symbol
[javac] Options options = new Options();
[javac] ^
[javac] symbol: class Options
[javac] location: class Msa2pi
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:25: error: cannot find symbol
[javac] CommandLineParser parser = new PosixParser();
[javac] ^
[javac] symbol: class CommandLineParser
[javac] location: class Msa2pi
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:25: error: cannot find symbol
[javac] CommandLineParser parser = new PosixParser();
[javac] ^
[javac] symbol: class PosixParser
[javac] location: class Msa2pi
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:26: error: cannot find symbol
[javac] CommandLine cmd=null;
[javac] ^
[javac] symbol: class CommandLine
[javac] location: class Msa2pi
[javac] /home/lp364/software/MSA2pi/src/Msa2pi.java:29: error: cannot find symbol
[javac] } catch (ParseException e) {
[javac] ^
[javac] symbol: class ParseException
[javac] location: class Msa2pi
[javac] 11 errors
BUILD FAILED
/home/lp364/software/MSA2pi/build.xml:43: Compile failed; see the compiler error output for details.
Total time: 0 seconds
`
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