baoxingsong Goto Github PK

anchorwave

sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

anchorwave-msa

baoxing-s-cv

Baoxing's CV

baoxingsong.github.io

personal website

bioconda-recipes

Conda recipes for the bioconda channel.

cnspublication

Home made source code used for Andropogoneae CNS analysis

dcns

conserved non-coding sequence

gapit3

Genome Association Predict Integrate Tools

gean

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

genomealignment

Compare different genome alignment tools using a wide range of genomes with different complexities.

gwas

The scripts I used for GWAS analysis.

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

irisas

Integrated region-based variants synchronization and Annotation for different inbreeding lines

meta-mesh

Meta-Mesh: metagenomic data analysis system

metasee

An Interactive and Extendable Visualization Toolbox for Metagenomic Sample Analysis and Comparison

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mixmogam

Mixed Model Package For Genome-wide association mapping.

mlmm

multiallelic linear mixed model

msa2pi

caculate pi value from multiple sequence alignment fasta file

mtmm

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

mybioutil

My scripts

parallelblast

ppipp

PPIPP: an online protein-protein interaction network prediction and analysis platform

properseqtools

quota_anchor

Strand and WGD aware syntenic gene identification

stsgp

Sequence-to-sequence gene structure predication

the-first-hackation-in-the-lab

the-second-hackation

The second hackathon at PKU-IAAS

wsa

sequence alignment